On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1002.7
nTPM
HPA Brain:
307.6
nTPM
GTEx:
1002.7
nTPM
FANTOM5:
41.4
Scaled Tags Per Million
Macaque:
2.1
nTPM
Mouse:
268.7
nTPM
Pig:
5.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - Annotated protein expression
Pending normal tissue analysis
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
32954
Sample
Intensity
Spinal cord_01
54088
Spinal cord_02
27691
Spinal cord_03
33227
Spinal cord_04
44700
Spinal cord_05
29138
Spinal cord_06
33792
Spinal cord_07
32682
Spinal cord_08
31559
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
307.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 263.8
2193
Male, age 75, both hemispheres
285.6
2819
Male, age 47, both hemispheres
270.4
2734
Male, age 80, both hemispheres
264.9
2818
Female, age 79, both hemispheres
234.1
Cervical spinal cord, central gray nTPM: 242.5
2565
Male, age 75, midline
299.8
1981
Female, age 72, midline
277.0
2194
Female, age 79, both hemispheres
217.6
2816
Male, age 47, midline
212.0
2048
Male, age 55, midline
206.2
Cervical spinal cord, dorsal horn nTPM: 228.1
2173
Female, age 72, unknown
295.7
2296
Male, age 66, both hemispheres
266.2
2069
Male, age 47, both hemispheres
254.2
1877
Male, age 55, unknown
221.1
2721
Male, age 90, both hemispheres
167.6
2297
Male, age 75, both hemispheres
163.9
Cervical spinal cord, ventral horn nTPM: 307.6
2480
Male, age 75, both hemispheres
412.1
2809
Male, age 90, both hemispheres
378.8
2098
Female, age 72, unknown
321.1
2295
Male, age 66, both hemispheres
287.3
2068
Male, age 55, unknown
255.9
2820
Female, age 79, both hemispheres
190.3
Dorsal funiculus (white matter) nTPM: 266.1
2128
Male, age 75, both hemispheres
292.3
2810
Male, age 90, both hemispheres
285.3
2064
Female, age 79, both hemispheres
261.7
2817
Male, age 47, both hemispheres
255.4
2812
Male, age 66, both hemispheres
235.6
Lateral funiculus (white matter) nTPM: 280.1
2192
Male, age 75, both hemispheres
294.4
2094
Female, age 79, both hemispheres
280.8
2294
Male, age 66, both hemispheres
273.5
2099
Male, age 90, both hemispheres
271.9
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1002.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1002.7
Samples: 204
Max nTPM: 2034.6
Min nTPM: 508.8
Std nTPM: 234.4
Median nTPM: 984.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
2034.6
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1616.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1615.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1539.5
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1513.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1468.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1462.3
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1450.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1401.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1396.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1387.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1387.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1383.1
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1374.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1372.0
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1368.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1365.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1359.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1356.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1342.8
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1335.1
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1326.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1325.9
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1306.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1305.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1304.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1280.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1274.6
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1259.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1257.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1252.6
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1250.0
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1242.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1242.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1232.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1225.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1216.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1212.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1209.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1204.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1203.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1200.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1189.7
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1186.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1183.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1178.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1166.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1144.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1141.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1135.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1134.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1132.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1130.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1129.2
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1122.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1120.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1120.2
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1114.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1112.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1111.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1106.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1104.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1093.2
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1092.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1091.3
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1083.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1077.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1073.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1070.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1066.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1065.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1063.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1063.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1056.5
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1051.5
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
1050.6
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1048.5
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1046.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1041.1
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1035.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1034.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1034.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1032.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1031.9
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1029.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1028.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1026.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1025.6
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1016.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1014.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1013.4
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1011.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1006.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1002.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
997.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
996.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
994.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
989.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
988.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
987.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
986.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
984.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
983.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
982.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
982.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
982.5
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
976.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
971.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
962.8
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
960.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
958.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
958.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
955.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
953.3
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
949.8
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
946.6
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
945.1
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
943.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
935.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
933.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
931.0
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
925.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
924.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
922.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
921.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
914.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
908.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
907.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
902.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
899.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
897.1
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
896.1
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
895.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
894.8
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
884.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
881.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
881.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
874.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
873.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
867.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
864.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
861.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
860.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
856.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
854.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
850.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
849.9
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
848.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
847.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
846.5
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
845.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
831.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
823.8
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
817.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
815.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
811.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
809.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
798.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
798.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
796.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
796.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
790.7
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
789.3
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
787.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
786.0
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
785.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
784.5
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
781.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
781.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
780.9
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
777.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
768.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
765.6
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
764.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
758.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
755.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
754.8
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
754.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
754.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
751.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
748.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
742.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
741.8
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
731.8
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
722.6
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
720.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
716.2
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
699.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
699.1
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
693.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
682.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
676.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
672.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
671.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
668.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
666.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
654.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
652.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
634.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
629.4
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
608.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
586.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
555.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
508.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 2.2
Samples: 2
Max nTPM: 2.5
Min nTPM: 1.8
Sample A
2.5
Sample B
1.8
Ventral spinal cord nTPM: 1.9
Samples: 1
Max nTPM: 1.9
Min nTPM: 1.9
Sample A
1.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 5.4
Samples: 4
Max nTPM: 9.1
Min nTPM: 1.3
Sample A
Female
1.3
Sample B
Female
9.1
Sample C
Male
7.2
Sample D
Male
3.9
Ventral spinal cord nTPM: 4.8
Samples: 4
Max nTPM: 8.3
Min nTPM: 1.7
Sample A
Female
1.7
Sample B
Female
8.3
Sample C
Male
4.2
Sample D
Male
4.8
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
268.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 268.7
Samples: 4
Max nTPM: 280.1
Min nTPM: 251.7
Sample A
251.7
Sample B
280.1
Sample C
277.3
Sample D
265.8
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The Human Protein Atlas project is funded
