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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
242.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 216.1
2586
Male, age 75, left hemisphere
269.2
2666
Male, age 74, left hemisphere
246.2
2828
Female, age 72, unknown
225.8
1870
Female, age 42, unknown
218.4
2411
Female, age 72, unknown
211.9
1833
Male, age 53, unknown
204.8
1827
Male, age 72, unknown
203.5
1830
Male, age 51, unknown
203.3
2019
Male, age 18, unknown
202.5
2219
Male, age 76, both hemispheres
175.6
Dorsal raphe nucleus nTPM: 203.8
2298
Female, age 72, unknown
215.1
1828
Male, age 53, unknown
209.3
2016
Female, age 72, unknown
209.1
2750
Male, age 76, both hemispheres
201.3
2047
Male, age 72, unknown
184.0
Inferior colliculus nTPM: 208.4
2849
Male, age 72, unknown
212.5
1848
Female, age 42, unknown
211.8
1890
Male, age 53, unknown
210.4
2097
Female, age 72, unknown
198.7
Median raphe nucleus nTPM: 191.7
2220
Male, age 76, midline
191.7
Periaquaductal grey, anterior nTPM: 218.3
2502
Female, age 75, unknown
242.5
1795
Male, age 51, unknown
207.2
1947
Male, age 18, unknown
205.1
Periaquaductal grey, dorsal nTPM: 187.8
1840
Male, age 53, unknown
220.6
1831
Male, age 72, unknown
189.2
2464
Female, age 72, unknown
182.7
2850
Male, age 76, both hemispheres
158.6
Periaquaductal grey, lateral nTPM: 184.0
2053
Male, age 18, unknown
196.3
2272
Male, age 74, both hemispheres
184.1
2140
Male, age 76, both hemispheres
171.6
Pretectal area nTPM: 193.0
2407
Male, age 75, both hemispheres
216.1
2825
Male, age 18, unknown
208.8
1817
Female, age 42, unknown
208.1
2007
Male, age 72, unknown
203.1
1816
Male, age 51, unknown
198.0
1815
Male, age 53, unknown
194.1
2224
Female, age 72, unknown
190.1
2316
Male, age 76, right hemisphere
182.4
2273
Male, age 74, both hemispheres
177.6
1944
Female, age 72, unknown
177.3
2667
Female, age 75, unknown
167.4
Red nucleus nTPM: 220.6
2584
Male, age 75, left hemisphere
269.7
2503
Female, age 72, unknown
246.1
1821
Female, age 72, unknown
234.0
2769
Male, age 72, unknown
231.2
1865
Male, age 51, unknown
230.3
2227
Male, age 72, unknown
223.2
2725
Female, age 75, unknown
211.4
1904
Male, age 53, unknown
210.8
2785
Male, age 18, unknown
206.0
2588
Male, age 74, left hemisphere
205.1
1954
Female, age 42, unknown
204.8
2823
Male, age 76, right hemisphere
174.3
Substantia nigra nTPM: 242.0
2665
Male, age 74, both hemispheres
288.1
1851
Male, age 51, unknown
264.4
2699
Male, age 18, unknown
252.5
2241
Male, age 72, unknown
244.5
2590
Female, age 75, unknown
243.2
2583
Male, age 75, right hemisphere
242.3
1916
Female, age 42, unknown
232.7
2409
Female, age 72, unknown
231.4
1941
Male, age 53, unknown
223.6
1889
Female, age 72, unknown
197.6
Superior colliculus nTPM: 212.7
2664
Male, age 75, both hemispheres
266.2
2587
Male, age 74, left hemisphere
239.9
2668
Female, age 75, unknown
224.1
2261
Male, age 18, unknown
208.5
1995
Male, age 72, unknown
207.4
1796
Male, age 53, unknown
207.1
1839
Male, age 51, unknown
203.5
1913
Female, age 42, unknown
203.2
2087
Female, age 72, unknown
185.4
1895
Male, age 76, right hemisphere
181.4
Ventral tegmental area nTPM: 216.7
1915
Female, age 42, unknown
245.9
2223
Female, age 72, unknown
243.7
1942
Male, age 51, unknown
209.7
2021
Male, age 53, unknown
208.7
2410
Female, age 72, unknown
202.3
2218
Male, age 76, both hemispheres
189.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
922.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 922.5
Samples: 183
Max nTPM: 2055.1
Min nTPM: 461.6
Std nTPM: 266.0
Median nTPM: 878.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
2055.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1807.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1806.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1675.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1592.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1535.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1501.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1496.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1473.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1415.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1413.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1362.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1317.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1316.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1300.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1288.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1287.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1286.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1282.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1277.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1276.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1252.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1240.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1202.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1202.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1200.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1197.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1185.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1172.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1163.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1136.8
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1129.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1124.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1109.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1099.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1081.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1080.7
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1071.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1070.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1070.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1064.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1063.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1058.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1054.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1052.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1048.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1048.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1048.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1043.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1042.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1036.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1034.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1031.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1026.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1017.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1015.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1011.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1010.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
992.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
991.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
986.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
984.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
983.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
980.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
975.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
971.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
963.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
960.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
959.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
950.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
943.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
941.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
939.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
938.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
931.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
930.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
929.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
928.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
927.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
925.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
916.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
915.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
911.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
908.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
900.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
898.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
894.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
884.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
883.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
883.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
880.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
878.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
872.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
870.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
866.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
866.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
861.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
856.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
856.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
855.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
852.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
847.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
843.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
839.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
837.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
833.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
829.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
827.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
825.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
823.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
821.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
819.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
814.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
810.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
797.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
796.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
792.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
788.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
786.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
780.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
779.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
777.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
774.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
773.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
772.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
767.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
767.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
766.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
764.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
756.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
756.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
753.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
752.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
745.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
743.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
739.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
732.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
730.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
723.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
721.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
720.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
718.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
716.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
714.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
712.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
703.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
693.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
692.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
689.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
686.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
685.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
684.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
681.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
678.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
678.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
675.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
671.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
665.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
663.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
656.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
655.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
654.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
651.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
649.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
644.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
633.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
628.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
625.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
618.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
618.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
607.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
607.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
607.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
591.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
590.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
565.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
558.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
555.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
552.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
530.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
524.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
464.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
461.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 4.6
Samples: 4
Max nTPM: 8.4
Min nTPM: 1.1
Sample A
Female
1.1
Sample B
Female
8.4
Sample C
Male
4.2
Sample D
Male
4.5
Midbrain nTPM: 4.3
Samples: 4
Max nTPM: 7.9
Min nTPM: 1.2
Sample A
Female
1.2
Sample B
Female
7.9
Sample C
Male
4.8
Sample D
Male
3.4
Periaqueductal gray nTPM: 5.4
Samples: 3
Max nTPM: 7.6
Min nTPM: 3.4
Sample B
Female
7.6
Sample C
Male
5.2
Sample D
Male
3.4
Superior colliculi nTPM: 5.0
Samples: 4
Max nTPM: 9.0
Min nTPM: 1.0
Sample A
Female
1.0
Sample B
Female
9.0
Sample C
Male
6.1
Sample D
Male
3.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
491.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 491.4
Samples: 4
Max nTPM: 533.9
Min nTPM: 457.0
Sample A
Male
533.9
Sample B
Male
457.0
Sample C
Female
466.1
Sample D
Female
508.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.