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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

114.748
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.6 nTPM
HPA Brain:69.1 nTPM
GTEx:37.6 nTPM
FANTOM5:73.7 Scaled Tags Per Million
Pig:32.6 nTPM
Mouse:54.3 nTPM
Allen mouse:1.8 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA004689
Amygdala mean intensity 114.748
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 99.432
Basal medial amygdaloid nucleus 105.139
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus -
Cortical amygdala 40.233
Central amygdala -
Medial amygdaloid nucleus 114.748

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.1
Sample id Sample description nTPM
Amygdala
nTPM: 59.2
2695 Female, age 67, right hemisphere 65.2
2814 Male, age 76, right hemisphere 59.5
2514 Male, age 75, right hemisphere 59.2
2517 Female, age 94, left hemisphere 59.2
1987 Female, age 91, left hemisphere 52.9
Basal amygdala
nTPM: 63.3
2827 Female, age 67, right hemisphere 74.4
2685 Female, age 94, left hemisphere 66.8
2609 Male, age 75, right hemisphere 64.9
1955 Male, age 76, both hemispheres 64.0
2243 Female, age 91, right hemisphere 56.0
2110 Male, age 80, left hemisphere 53.4
Central amygdala
nTPM: 64.5
2515 Male, age 75, right hemisphere 75.2
2826 Female, age 94, left hemisphere 67.4
2701 Female, age 91, right hemisphere 67.3
2239 Male, age 80, left hemisphere 58.4
1905 Male, age 76, both hemispheres 54.1
Corticomedial amygdala
nTPM: 53.8
2428 Male, age 75, right hemisphere 59.8
2535 Female, age 67, right hemisphere 55.3
2240 Male, age 76, both hemispheres 54.5
2829 Male, age 80, left hemisphere 54.0
2429 Female, age 94, left hemisphere 51.1
2242 Female, age 91, right hemisphere 48.0
Lateral amygdala
nTPM: 69.1
2830 Female, age 67, right hemisphere 90.6
2534 Female, age 94, left hemisphere 69.0
2256 Male, age 80, left hemisphere 68.6
2516 Male, age 75, right hemisphere 67.2
2255 Female, age 91, right hemisphere 66.5
1883 Male, age 76, both hemispheres 52.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.6
Samples: 152

Max nTPM: 68.3
Min nTPM: 14.7
Std nTPM: 10.5
Median nTPM: 36.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 68.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 65.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 63.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 61.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 60.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 57.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 56.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 54.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 53.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 53.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 53.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 52.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 51.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 51.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 51.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 49.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 49.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 47.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 47.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 46.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 46.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 46.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 46.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 46.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 45.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 45.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 44.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 44.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 44.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 43.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 43.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 43.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 43.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 42.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 42.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 42.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 42.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 41.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 41.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 41.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 41.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 40.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 40.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 40.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 40.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 40.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 39.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 39.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 39.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 39.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 38.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 38.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 38.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 37.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 37.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 37.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 37.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 37.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 36.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 36.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 36.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 36.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 36.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 36.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 35.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 34.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 34.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 34.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 34.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 34.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 34.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 34.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 34.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 33.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 33.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 33.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 32.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 32.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 32.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 32.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 32.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 32.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 31.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 31.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 31.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 31.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 31.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 30.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 30.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 30.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 30.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 30.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 30.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 29.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 29.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 29.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 29.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 28.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 28.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 28.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 28.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 27.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 27.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 27.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 27.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 26.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 26.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 26.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 26.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 25.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 25.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 24.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 23.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 23.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 22.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 22.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 21.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 21.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 20.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 20.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 19.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 19.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 18.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 17.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 14.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 73.7
FF:10151-102I7 76 years, female 73.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.6
Pig sample Sample description nTPM
Amygdala
nTPM: 32.6
Samples: 4

Max nTPM: 42.9
Min nTPM: 27.1
Sample A Female 42.9
Sample B Female 27.1
Sample C Male 28.1
Sample D Male 32.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 54.3
Samples: 4

Max nTPM: 59.3
Min nTPM: 51.3
Sample A Male 59.3
Sample B Male 54.8
Sample C Female 51.7
Sample D Female 51.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.8
69526797 Antisense, RP_050421_01_F08, Mouse strain C57BL/6J (56 days, male) 1.8

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