HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		99.866
RNA expressioni
Consensus:50.8 nTPM
HPA Brain:64.5 nTPM
GTEx:50.8 nTPM
FANTOM5:66.6 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:54.7 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004689Antibody HPA008285
Glial cells Not detectedNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA004689
Hippocampal formation mean intensity 99.866
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 78.602
Molecular layer of the dentate gyrus 45.808
Granular dentate gyrus 99.866
CA1 - oriens layer 54.505
CA1 - pyramidal layer 94.466
CA1 - radiatum layer 52.619
CA2 - oriens layer 21.317
CA2 - pyramidal layer 35.616
CA2 - radiatum layer 28.645
CA3 - oriens layer 30.396
CA3 - pyramidal layer 41.165
CA3 - radiatum layer 27.965
Stratum lucidum 32.973
Lacunosum moleculare 37.849
Subiculum 30.576

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 64.5
Sample id Sample description nTPM
Hippocampus
nTPM: 63.4
1855 Male, age 76, left hemisphere 67.9
2621 Female, age 67, right hemisphere 65.8
1911 Female, age 85, right hemisphere 64.8
2148 Female, age 91, left hemisphere 64.6
2529 Female, age 94, left hemisphere 60.3
1898 Male, age 80, left hemisphere 57.2
Dentate gyrus
nTPM: 64.5
2530 Female, age 94, left hemisphere 74.5
2010 Male, age 76, both hemispheres 66.2
2528 Male, age 74, both hemispheres 64.6
2531 Female, age 67, both hemispheres 64.2
2246 Female, age 85, both hemispheres 61.0
1927 Female, age 91, both hemispheres 56.1
Entorhinal gyrus
nTPM: 64.3
2117 Female, age 91, right hemisphere 82.1
2613 Female, age 94, left hemisphere 66.2
2764 Male, age 80, right hemisphere 66.2
1787 Male, age 76, left hemisphere 59.2
2686 Male, age 75, right hemisphere 56.7
1938 Female, age 85, left hemisphere 55.7
Hippocampus, CA1
nTPM: 58.1
1873 Female, age 85, both hemispheres 64.5
2045 Male, age 76, both hemispheres 57.8
2527 Male, age 74, both hemispheres 57.2
2082 Female, age 91, right hemisphere 56.2
2749 Male, age 80, left hemisphere 54.7
Hippocampus, CA2
nTPM: 59.9
1963 Male, age 80, left hemisphere 68.5
2437 Female, age 94, left hemisphere 59.6
1940 Female, age 85, left hemisphere 58.6
2249 Male, age 74, both hemispheres 58.6
2113 Female, age 91, right hemisphere 58.1
1892 Male, age 76, both hemispheres 55.9
Hippocampus, CA3
nTPM: 63.1
2620 Female, age 94, left hemisphere 82.5
1891 Female, age 85, both hemispheres 69.5
2861 Female, age 67, both hemispheres 65.8
1867 Male, age 76, both hemispheres 55.7
2436 Male, age 74, both hemispheres 54.5
2137 Male, age 80, left hemisphere 50.7
Parahippocampal cortex
nTPM: 56.1
2692 Male, age 74, both hemispheres 69.0
2532 Female, age 72, left hemisphere 64.3
1990 Female, age 91, right hemisphere 57.8
2245 Female, age 91, both hemispheres 56.0
2018 Male, age 76, both hemispheres 55.7
1850 Male, age 80, both hemispheres 55.1
1933 Female, age 85, both hemispheres 54.4
2693 Female, age 94, both hemispheres 53.0
2622 Female, age 67, right hemisphere 49.3
2250 Female, age 67, right hemisphere 46.4
Perirhinal gyrus
nTPM: 51.5
2848 Male, age 76, right hemisphere 55.6
1794 Male, age 80, right hemisphere 54.4
2521 Female, age 94, right hemisphere 50.3
1847 Female, age 91, left hemisphere 48.9
1841 Female, age 85, right hemisphere 48.5
Subiculum
nTPM: 64.5
2042 Male, age 76, both hemispheres 76.7
2619 Male, age 74, both hemispheres 66.6
1901 Male, age 80, both hemispheres 64.0
1977 Female, age 85, both hemispheres 60.0
2438 Female, age 94, left hemisphere 59.9
2729 Female, age 91, right hemisphere 59.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 50.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.8
Samples: 197

Max nTPM: 161.3
Min nTPM: 18.1
Std nTPM: 22.4
Median nTPM: 46.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 161.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 153.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 146.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 118.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 112.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 105.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 104.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 103.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 98.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 92.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 92.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.6
FF:10153-102I9 76 years, female 78.2
FF:10169-103B7 60 years, female 55.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.0
Pig sample Sample description nTPM
Subiculum
nTPM: 39.0
Samples: 4

Max nTPM: 50.1
Min nTPM: 31.5
Sample A Female 50.1
Sample B Female 35.5
Sample C Male 39.0
Sample D Male 31.5
Dorsal hippocampus
nTPM: 35.3
Samples: 4

Max nTPM: 40.0
Min nTPM: 28.8
Sample A Female 40.0
Sample B Female 32.9
Sample C Male 39.4
Sample D Male 28.8
Entorhinal cortex
nTPM: 33.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 30.2
Sample A Female 39.0
Sample B Female 30.5
Sample C Male 34.9
Sample D Male 30.2
Ventral hippocampus
nTPM: 37.1
Samples: 4

Max nTPM: 51.6
Min nTPM: 28.7
Sample A Female 37.9
Sample B Female 30.2
Sample C Male 51.6
Sample D Male 28.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 54.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.7
Samples: 4

Max nTPM: 62.5
Min nTPM: 49.8
Sample A Male 49.8
Sample B Male 51.7
Sample C Female 54.7
Sample D Female 62.5
Hippocampal formation
nTPM: 46.7
Samples: 4

Max nTPM: 49.8
Min nTPM: 45.0
Sample A Male 49.8
Sample B Male 45.7
Sample C Female 46.1
Sample D Female 45.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
69526797 Antisense, RP_050421_01_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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