MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.7 nTPM
HPA Brain:73.9 nTPM
GTEx:34.7 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:31.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.2
2586 Male, age 75, left hemisphere 109.1
1830 Male, age 51, unknown 81.4
1833 Male, age 53, unknown 76.5
2828 Female, age 72, unknown 75.3
2411 Female, age 72, unknown 70.6
2019 Male, age 18, unknown 69.2
1870 Female, age 42, unknown 67.6
2666 Male, age 74, left hemisphere 67.1
1827 Male, age 72, unknown 57.9
2219 Male, age 76, both hemispheres 47.9
Dorsal raphe nucleus
nTPM: 52.7
2016 Female, age 72, unknown 59.3
2750 Male, age 76, both hemispheres 58.0
1828 Male, age 53, unknown 54.7
2047 Male, age 72, unknown 47.6
2298 Female, age 72, unknown 43.7
Inferior colliculus
nTPM: 52.6
2849 Male, age 72, unknown 61.3
1848 Female, age 42, unknown 52.2
1890 Male, age 53, unknown 51.0
2097 Female, age 72, unknown 45.8
Median raphe nucleus
nTPM: 50.6
2220 Male, age 76, midline 50.6
Periaquaductal grey, anterior
nTPM: 56.7
2502 Female, age 75, unknown 60.4
1947 Male, age 18, unknown 55.0
1795 Male, age 51, unknown 54.9
Periaquaductal grey, dorsal
nTPM: 54.8
2464 Female, age 72, unknown 61.9
2850 Male, age 76, both hemispheres 54.9
1831 Male, age 72, unknown 54.1
1840 Male, age 53, unknown 48.2
Periaquaductal grey, lateral
nTPM: 59.1
2053 Male, age 18, unknown 60.9
2140 Male, age 76, both hemispheres 60.1
2272 Male, age 74, both hemispheres 56.5
Pretectal area
nTPM: 59.0
2407 Male, age 75, both hemispheres 85.6
2316 Male, age 76, right hemisphere 68.6
1815 Male, age 53, unknown 67.4
2825 Male, age 18, unknown 62.6
1817 Female, age 42, unknown 60.9
2667 Female, age 75, unknown 59.5
2007 Male, age 72, unknown 55.3
2224 Female, age 72, unknown 50.6
2273 Male, age 74, both hemispheres 48.6
1816 Male, age 51, unknown 45.0
1944 Female, age 72, unknown 45.0
Red nucleus
nTPM: 73.9
1904 Male, age 53, unknown 85.3
1865 Male, age 51, unknown 81.8
2584 Male, age 75, left hemisphere 80.6
2785 Male, age 18, unknown 78.6
2588 Male, age 74, left hemisphere 77.9
2769 Male, age 72, unknown 77.6
2227 Male, age 72, unknown 75.8
2823 Male, age 76, right hemisphere 72.2
1821 Female, age 72, unknown 67.9
1954 Female, age 42, unknown 67.8
2503 Female, age 72, unknown 66.3
2725 Female, age 75, unknown 55.5
Substantia nigra
nTPM: 56.9
2583 Male, age 75, right hemisphere 79.0
2590 Female, age 75, unknown 68.4
2699 Male, age 18, unknown 61.0
1851 Male, age 51, unknown 60.1
2409 Female, age 72, unknown 57.0
2665 Male, age 74, both hemispheres 54.5
1889 Female, age 72, unknown 52.9
2241 Male, age 72, unknown 46.4
1916 Female, age 42, unknown 45.3
1941 Male, age 53, unknown 44.5
Superior colliculus
nTPM: 68.2
2664 Male, age 75, both hemispheres 92.8
1995 Male, age 72, unknown 89.7
1913 Female, age 42, unknown 82.0
2668 Female, age 75, unknown 66.4
1839 Male, age 51, unknown 66.0
2587 Male, age 74, left hemisphere 61.0
1796 Male, age 53, unknown 60.7
1895 Male, age 76, right hemisphere 58.5
2261 Male, age 18, unknown 54.5
2087 Female, age 72, unknown 50.7
Ventral tegmental area
nTPM: 57.3
2410 Female, age 72, unknown 62.6
2223 Female, age 72, unknown 60.3
2021 Male, age 53, unknown 60.1
1942 Male, age 51, unknown 56.0
1915 Female, age 42, unknown 54.1
2218 Male, age 76, both hemispheres 50.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.7
Samples: 139

Max nTPM: 67.9
Min nTPM: 17.3
Std nTPM: 10.1
Median nTPM: 33.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 67.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 65.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 63.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 61.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 60.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 59.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 58.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 54.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 54.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 51.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.6
FF:10158-103A5 76 years, female 82.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 52.0
Min nTPM: 45.8
Sample A Female 47.4
Sample B Female 52.0
Sample C Male 45.8
Sample D Male 50.4
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 64.6
Min nTPM: 29.8
Sample A Female 64.6
Sample B Female 35.9
Sample C Male 46.9
Sample D Male 29.8
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 37.2
Min nTPM: 33.6
Sample B Female 33.6
Sample C Male 37.2
Sample D Male 36.1
Superior colliculi
nTPM: 40.7
Samples: 4

Max nTPM: 48.4
Min nTPM: 36.3
Sample A Female 39.8
Sample B Female 48.4
Sample C Male 36.3
Sample D Male 38.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 32.9
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 30.6
Sample C Female 32.9
Sample D Female 31.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69526797 Antisense, RP_050421_01_F08, Mouse strain C57BL/6J (56 days, male) 0.3

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