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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:39.5 nTPM
HPA Brain:64.4 nTPM
GTEx:39.5 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:54.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 58.7
2565 Male, age 75, midline 76.6
2194 Female, age 79, both hemispheres 59.2
2816 Male, age 47, midline 56.2
1981 Female, age 72, midline 51.6
2048 Male, age 55, midline 49.8
Cervical spinal cord, dorsal horn
nTPM: 59.4
2069 Male, age 47, both hemispheres 64.2
2296 Male, age 66, both hemispheres 62.7
2721 Male, age 90, both hemispheres 59.4
1877 Male, age 55, unknown 57.2
2173 Female, age 72, unknown 56.3
2297 Male, age 75, both hemispheres 56.3
Cervical spinal cord, ventral horn
nTPM: 64.4
2480 Male, age 75, both hemispheres 77.3
2809 Male, age 90, both hemispheres 68.6
2820 Female, age 79, both hemispheres 68.1
2295 Male, age 66, both hemispheres 60.4
2068 Male, age 55, unknown 58.5
2098 Female, age 72, unknown 53.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 39.5
Samples: 159

Max nTPM: 88.3
Min nTPM: 15.0
Std nTPM: 11.8
Median nTPM: 38.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 88.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 78.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 73.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 73.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 69.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 65.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 63.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 63.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 59.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 59.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 58.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 57.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 56.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 55.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 55.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 54.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 53.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 53.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 52.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 49.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 49.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 48.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 48.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 47.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 46.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 46.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 45.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 45.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 45.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 45.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 45.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 45.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 45.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 44.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 44.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 44.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 44.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 44.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 44.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 44.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 44.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 43.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 42.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 42.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 42.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 42.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 42.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 41.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 41.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 41.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 41.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 41.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 41.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 41.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 40.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 40.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 40.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 40.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 39.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 39.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 39.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 39.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 39.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 39.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 39.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 38.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 38.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 38.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 38.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 38.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 38.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 38.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 38.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 37.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 37.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 37.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 37.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 37.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 37.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 37.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 37.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 37.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 36.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 36.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 36.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 36.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 35.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 35.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 35.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 35.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 35.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 35.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 35.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 35.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 34.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 34.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 34.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 34.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 33.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 33.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 33.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 33.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 33.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 33.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 33.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 32.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 32.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 32.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 32.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 32.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 32.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 32.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 32.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 31.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 30.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 30.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 30.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 30.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 30.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 30.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 30.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 30.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 29.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 29.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 29.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 28.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 28.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 28.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 28.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 28.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 28.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 27.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 27.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 26.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 26.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 26.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 26.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 26.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 26.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 26.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 25.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 24.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 24.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 24.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 23.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 22.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 21.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 21.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 21.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 19.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 18.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 15.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 64.2
FF:10159-103A6 76 years, female 69.2
FF:10181-103D1 60 years, female 59.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.2
Samples: 4

Max nTPM: 73.7
Min nTPM: 41.6
Sample A Female 41.6
Sample B Female 56.0
Sample C Male 73.7
Sample D Male 45.3
Ventral spinal cord
nTPM: 52.5
Samples: 4

Max nTPM: 56.4
Min nTPM: 49.9
Sample A Female 50.5
Sample B Female 49.9
Sample C Male 56.4
Sample D Male 53.0

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