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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:92.9 nTPM
HPA Brain:60.5 nTPM
GTEx:92.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.5
Sample id Sample description nTPM
Amygdala
nTPM: 58.8
2814 Male, age 76, right hemisphere 73.0
1987 Female, age 91, left hemisphere 58.3
2695 Female, age 67, right hemisphere 57.8
2514 Male, age 75, right hemisphere 54.6
2517 Female, age 94, left hemisphere 50.5
Basal amygdala
nTPM: 58.6
2243 Female, age 91, right hemisphere 64.9
2685 Female, age 94, left hemisphere 64.8
1955 Male, age 76, both hemispheres 63.7
2110 Male, age 80, left hemisphere 59.7
2609 Male, age 75, right hemisphere 59.7
2827 Female, age 67, right hemisphere 38.7
Central amygdala
nTPM: 60.5
2239 Male, age 80, left hemisphere 63.2
2826 Female, age 94, left hemisphere 61.9
2701 Female, age 91, right hemisphere 60.4
1905 Male, age 76, both hemispheres 60.2
2515 Male, age 75, right hemisphere 56.9
Corticomedial amygdala
nTPM: 58.2
2240 Male, age 76, both hemispheres 67.1
2429 Female, age 94, left hemisphere 64.3
2242 Female, age 91, right hemisphere 62.5
2829 Male, age 80, left hemisphere 59.3
2428 Male, age 75, right hemisphere 54.6
2535 Female, age 67, right hemisphere 41.4
Lateral amygdala
nTPM: 55.8
1883 Male, age 76, both hemispheres 66.7
2534 Female, age 94, left hemisphere 66.6
2516 Male, age 75, right hemisphere 62.7
2255 Female, age 91, right hemisphere 49.5
2256 Male, age 80, left hemisphere 48.1
2830 Female, age 67, right hemisphere 41.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 92.9
Samples: 152

Max nTPM: 196.5
Min nTPM: 43.1
Std nTPM: 28.1
Median nTPM: 86.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 196.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 180.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 175.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 167.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 149.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 149.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 143.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 141.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 138.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 137.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 137.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 137.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 136.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 136.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 133.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 128.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 127.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 126.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 125.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 122.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 118.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 117.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 117.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 113.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 113.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 112.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 112.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 109.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 109.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 108.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 108.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 108.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 107.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 107.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 104.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 103.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 103.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 103.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 102.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 101.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 100.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 98.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 98.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 98.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 97.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 97.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 96.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 96.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 95.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 92.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 92.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 92.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 92.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 91.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 90.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 89.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 89.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 89.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 89.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 88.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 88.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 87.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 86.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 86.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 84.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 84.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 84.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 83.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 83.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 83.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 82.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 82.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 81.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 81.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 80.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 80.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 80.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 80.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 80.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 79.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 79.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 78.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 78.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 77.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 76.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 75.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 75.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 74.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 74.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 74.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 74.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 73.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 73.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 73.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 72.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 71.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 71.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 70.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 69.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 69.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 68.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 68.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 68.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 67.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 66.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 65.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 65.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 64.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 64.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 64.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 64.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 63.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 63.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 61.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 61.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 60.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 58.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 54.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 54.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 52.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 48.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 43.1
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