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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:55.1 nTPM
HPA:29.3 nTPM
GTEx:55.1 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046697Antibody HPA061174
Glandular cells HighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.3
overview
Male, age 65
Small intestine sample 232
nTPM: 34.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 23.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 32
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 27.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 55.1
Samples: 187

Max nTPM: 125.3
Min nTPM: 30.3
Std nTPM: 14.9
Median nTPM: 54.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 125.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 102.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 101.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 99.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 91.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 91.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 90.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 85.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 85.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 80.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 80.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 78.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 77.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 77.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 76.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 75.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 75.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 74.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 73.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 73.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 72.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 72.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 71.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 71.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 71.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 70.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 69.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 69.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 68.6
GTEX-1192X-2526-SM-59868 50-59 years, male 68.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 68.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 68.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 67.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 67.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 67.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 66.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 66.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 65.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 65.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 64.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 64.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 63.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 63.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 62.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 62.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 61.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 61.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 61.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 61.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 61.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 61.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 60.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 60.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 59.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 59.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 59.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 58.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 58.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 58.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 58.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 58.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 58.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 58.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 57.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 57.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 57.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 57.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 57.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 57.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 57.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 57.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 56.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 56.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 56.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 56.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 56.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 56.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 56.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 56.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 56.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 56.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 56.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 56.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 56.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 55.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 55.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 55.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 55.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 55.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 55.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 54.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 54.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 54.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 54.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 54.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 53.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 53.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 53.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 53.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 53.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 53.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 52.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 52.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 52.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 52.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 51.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 51.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 51.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 51.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 51.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 50.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 50.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 49.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 49.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 49.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 49.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 48.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 48.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 47.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 47.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 47.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 47.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 47.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 46.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 46.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 45.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 45.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 45.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 45.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 45.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 45.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 45.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 45.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 45.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 44.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 44.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 44.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 44.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 44.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 44.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 43.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 43.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 43.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 43.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 43.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 43.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 43.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 42.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 42.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 42.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 42.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 42.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 42.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 42.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 42.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 42.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 41.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 41.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 41.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 40.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 40.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 40.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 39.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 38.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 38.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 37.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 37.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 37.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 37.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 37.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 37.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 37.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 36.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 36.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 36.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 36.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 36.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 36.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 35.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 35.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 35.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 35.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 34.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 34.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 32.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 31.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 30.3
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