MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.3 nTPM
HPA Brain:75.9 nTPM
GTEx:96.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.3
2586 Male, age 75, left hemisphere 66.9
2219 Male, age 76, both hemispheres 64.8
1827 Male, age 72, unknown 64.4
2666 Male, age 74, left hemisphere 63.6
1833 Male, age 53, unknown 62.1
1870 Female, age 42, unknown 56.6
1830 Male, age 51, unknown 55.7
2411 Female, age 72, unknown 54.9
2828 Female, age 72, unknown 53.8
2019 Male, age 18, unknown 50.0
Dorsal raphe nucleus
nTPM: 61.6
2047 Male, age 72, unknown 69.3
2298 Female, age 72, unknown 67.7
2750 Male, age 76, both hemispheres 62.0
1828 Male, age 53, unknown 61.0
2016 Female, age 72, unknown 48.0
Inferior colliculus
nTPM: 63.4
2097 Female, age 72, unknown 68.8
2849 Male, age 72, unknown 67.8
1848 Female, age 42, unknown 61.1
1890 Male, age 53, unknown 55.9
Median raphe nucleus
nTPM: 75.9
2220 Male, age 76, midline 75.9
Periaquaductal grey, anterior
nTPM: 59.2
1947 Male, age 18, unknown 63.0
1795 Male, age 51, unknown 61.8
2502 Female, age 75, unknown 52.7
Periaquaductal grey, dorsal
nTPM: 53.6
1840 Male, age 53, unknown 61.1
2850 Male, age 76, both hemispheres 57.9
2464 Female, age 72, unknown 53.4
1831 Male, age 72, unknown 42.1
Periaquaductal grey, lateral
nTPM: 48.9
2053 Male, age 18, unknown 50.8
2272 Male, age 74, both hemispheres 48.8
2140 Male, age 76, both hemispheres 47.0
Pretectal area
nTPM: 56.6
1817 Female, age 42, unknown 73.7
2007 Male, age 72, unknown 64.3
2224 Female, age 72, unknown 62.2
1815 Male, age 53, unknown 60.7
1816 Male, age 51, unknown 60.4
1944 Female, age 72, unknown 58.3
2825 Male, age 18, unknown 57.5
2667 Female, age 75, unknown 54.2
2407 Male, age 75, both hemispheres 47.1
2273 Male, age 74, both hemispheres 45.4
2316 Male, age 76, right hemisphere 38.7
Red nucleus
nTPM: 50.1
2725 Female, age 75, unknown 67.8
1821 Female, age 72, unknown 63.8
2584 Male, age 75, left hemisphere 55.7
2785 Male, age 18, unknown 55.6
1954 Female, age 42, unknown 51.1
2588 Male, age 74, left hemisphere 50.0
2769 Male, age 72, unknown 46.4
2503 Female, age 72, unknown 46.2
2227 Male, age 72, unknown 45.3
1904 Male, age 53, unknown 43.1
1865 Male, age 51, unknown 41.2
2823 Male, age 76, right hemisphere 35.3
Substantia nigra
nTPM: 64.9
1916 Female, age 42, unknown 78.3
2241 Male, age 72, unknown 74.6
1889 Female, age 72, unknown 72.2
1941 Male, age 53, unknown 69.7
1851 Male, age 51, unknown 69.3
2665 Male, age 74, both hemispheres 67.7
2699 Male, age 18, unknown 60.9
2583 Male, age 75, right hemisphere 57.3
2409 Female, age 72, unknown 51.4
2590 Female, age 75, unknown 47.4
Superior colliculus
nTPM: 53.2
2587 Male, age 74, left hemisphere 62.8
1839 Male, age 51, unknown 60.3
2668 Female, age 75, unknown 60.0
1895 Male, age 76, right hemisphere 57.5
1796 Male, age 53, unknown 55.5
2087 Female, age 72, unknown 51.4
2261 Male, age 18, unknown 50.9
1913 Female, age 42, unknown 45.8
2664 Male, age 75, both hemispheres 45.0
1995 Male, age 72, unknown 43.2
Ventral tegmental area
nTPM: 62.7
2218 Male, age 76, both hemispheres 71.0
1915 Female, age 42, unknown 66.5
2223 Female, age 72, unknown 66.0
2410 Female, age 72, unknown 62.4
1942 Male, age 51, unknown 56.5
2021 Male, age 53, unknown 53.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 96.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.3
Samples: 139

Max nTPM: 264.5
Min nTPM: 38.6
Std nTPM: 37.4
Median nTPM: 84.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 264.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 203.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 187.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 181.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 175.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 173.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 170.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 165.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 164.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 160.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 154.6
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