On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
320.6
nTPM
Macaque:
75.9
nTPM
Mouse:
41.6
nTPM
Rat:
67.7
nTPM
Pig:
74.1
nTPM
HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
320.6
Sample id
Sample description
nTPM
Arcuate nucleus nTPM: 269.6
2226
Male, age 75, left hemisphere
336.6
1961
Female, age 42, unknown
202.6
Dorsomedial nucleus nTPM: 203.3
1989
Male, age 62, unknown
217.2
2017
Female, age 42, unknown
209.4
2041
Female, age 72, unknown
183.3
Lateral hypothalamic area nTPM: 320.6
1791
Male, age 80, right hemisphere
416.7
2271
Male, age 75, both hemispheres
401.5
2228
Male, age 66, unknown
295.2
2412
Male, age 62, unknown
169.1
Mammillary body nTPM: 291.3
1923
Female, age 72, unknown
370.8
2413
Male, age 66, unknown
291.3
1945
Male, age 80, right hemisphere
290.9
1834
Female, age 42, unknown
262.9
1948
Female, age 72, unknown
240.9
Paraventricular nucleus nTPM: 182.5
2700
Male, age 62, unknown
182.5
Preoptic area nTPM: 248.9
1907
Male, age 80, right hemisphere
367.6
1861
Female, age 42, unknown
215.5
2414
Female, age 72, unknown
163.6
Supraoptic nucleus nTPM: 262.4
2043
Male, age 62, unknown
315.2
1894
Female, age 72, unknown
271.4
2835
Female, age 72, unknown
200.6
Ventromedial nucleus nTPM: 199.1
1982
Female, age 72, unknown
202.9
1822
Female, age 42, unknown
195.4
HYPOTHALAMUS - Macaque RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
75.9
Macaque sample
Sample description
nTPM
Preoptic area nTPM: 75.9
Samples: 1
Max nTPM: 75.9
Min nTPM: 75.9
Sample A
75.9
HYPOTHALAMUS - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.1
Pig sample
Sample description
nTPM
Hypothalamus nTPM: 74.1
Samples: 4
Max nTPM: 96.6
Min nTPM: 60.4
Sample A
Female
96.6
Sample B
Female
75.8
Sample C
Male
60.4
Sample D
Male
63.7
HYPOTHALAMUS - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.6
Mouse sample
Sample description
nTPM
Hypothalamus nTPM: 41.6
Samples: 4
Max nTPM: 45.6
Min nTPM: 39.3
Sample A
39.3
Sample B
45.6
Sample C
41.3
Sample D
40.1
HYPOTHALAMUS - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.7
Rat sample
Sample description
nTPM
Hypothalamus nTPM: 67.7
Samples: 4
Max nTPM: 71.9
Min nTPM: 64.7
Sample A
67.0
Sample A
64.7
Sample A
67.3
Sample A
71.9
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