On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
286.4
nTPM
FANTOM5:
366.0
Scaled Tags Per Million
Macaque:
131.6
nTPM
Mouse:
43.8
nTPM
Rat:
97.7
nTPM
Pig:
102.7
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
286.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 190.4
2019
Male, age 18, unknown
238.8
2828
Female, age 72, unknown
227.9
1827
Male, age 72, unknown
224.7
2586
Male, age 75, left hemisphere
222.2
1870
Female, age 42, unknown
194.5
1833
Male, age 53, unknown
183.3
2411
Female, age 72, unknown
176.2
1830
Male, age 51, unknown
174.0
2666
Male, age 74, left hemisphere
150.5
2219
Male, age 76, both hemispheres
111.7
Dorsal raphe nucleus nTPM: 230.8
2047
Male, age 72, unknown
262.1
2298
Female, age 72, unknown
242.1
1828
Male, age 53, unknown
240.4
2016
Female, age 72, unknown
209.7
2750
Male, age 76, both hemispheres
199.8
Inferior colliculus nTPM: 220.4
1890
Male, age 53, unknown
230.0
2097
Female, age 72, unknown
223.5
1848
Female, age 42, unknown
214.0
2849
Male, age 72, unknown
214.0
Median raphe nucleus nTPM: 283.6
2220
Male, age 76, midline
283.6
Periaquaductal grey, anterior nTPM: 239.4
1795
Male, age 51, unknown
249.6
2502
Female, age 75, unknown
242.8
1947
Male, age 18, unknown
225.7
Periaquaductal grey, dorsal nTPM: 231.0
2850
Male, age 76, both hemispheres
327.4
1840
Male, age 53, unknown
230.9
1831
Male, age 72, unknown
192.1
2464
Female, age 72, unknown
173.5
Periaquaductal grey, lateral nTPM: 286.4
2140
Male, age 76, both hemispheres
382.1
2272
Male, age 74, both hemispheres
264.9
2053
Male, age 18, unknown
212.2
Pretectal area nTPM: 255.8
2407
Male, age 75, both hemispheres
415.3
1816
Male, age 51, unknown
277.0
1944
Female, age 72, unknown
269.7
2007
Male, age 72, unknown
269.5
2316
Male, age 76, right hemisphere
262.4
1817
Female, age 42, unknown
243.5
2273
Male, age 74, both hemispheres
242.2
2667
Female, age 75, unknown
225.4
2224
Female, age 72, unknown
214.2
2825
Male, age 18, unknown
201.7
1815
Male, age 53, unknown
192.7
Red nucleus nTPM: 199.6
2725
Female, age 75, unknown
262.9
2785
Male, age 18, unknown
227.6
1821
Female, age 72, unknown
206.8
2823
Male, age 76, right hemisphere
204.7
2227
Male, age 72, unknown
204.0
2769
Male, age 72, unknown
202.4
2503
Female, age 72, unknown
199.2
1954
Female, age 42, unknown
190.3
1904
Male, age 53, unknown
182.8
1865
Male, age 51, unknown
176.2
2584
Male, age 75, left hemisphere
171.1
2588
Male, age 74, left hemisphere
167.6
Substantia nigra nTPM: 236.3
1916
Female, age 42, unknown
328.9
1851
Male, age 51, unknown
270.5
1941
Male, age 53, unknown
257.8
1889
Female, age 72, unknown
245.1
2409
Female, age 72, unknown
234.1
2699
Male, age 18, unknown
224.1
2241
Male, age 72, unknown
214.2
2590
Female, age 75, unknown
208.4
2665
Male, age 74, both hemispheres
194.5
2583
Male, age 75, right hemisphere
185.5
Superior colliculus nTPM: 214.6
2664
Male, age 75, both hemispheres
293.1
2261
Male, age 18, unknown
256.6
1796
Male, age 53, unknown
250.9
2087
Female, age 72, unknown
249.3
2587
Male, age 74, left hemisphere
197.9
2668
Female, age 75, unknown
194.6
1839
Male, age 51, unknown
182.1
1995
Male, age 72, unknown
176.8
1913
Female, age 42, unknown
175.3
1895
Male, age 76, right hemisphere
169.8
Ventral tegmental area nTPM: 225.8
1915
Female, age 42, unknown
268.5
2218
Male, age 76, both hemispheres
236.4
1942
Male, age 51, unknown
233.5
2021
Male, age 53, unknown
216.7
2410
Female, age 72, unknown
207.5
2223
Female, age 72, unknown
192.1
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
131.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 129.9
Samples: 1
Max nTPM: 129.9
Min nTPM: 129.9
Sample A
129.9
Midbrain nTPM: 121.0
Samples: 1
Max nTPM: 121.0
Min nTPM: 121.0
Sample A
121.0
Superior colliculi nTPM: 131.6
Samples: 1
Max nTPM: 131.6
Min nTPM: 131.6
Sample A
131.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 93.5
Samples: 3
Max nTPM: 117.5
Min nTPM: 65.5
Sample A
Female
117.5
Sample B
Female
65.5
Sample C
Male
97.5
Midbrain nTPM: 87.5
Samples: 3
Max nTPM: 97.4
Min nTPM: 70.9
Sample B
Female
70.9
Sample C
Male
94.1
Sample D
Male
97.4
Periaqueductal gray nTPM: 69.0
Samples: 3
Max nTPM: 76.7
Min nTPM: 61.3
Sample B
Female
69.1
Sample C
Male
76.7
Sample D
Male
61.3
Superior colliculi nTPM: 102.7
Samples: 4
Max nTPM: 125.3
Min nTPM: 78.4
Sample A
Female
125.3
Sample B
Female
78.4
Sample C
Male
119.2
Sample D
Male
88.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 43.8
Samples: 4
Max nTPM: 46.4
Min nTPM: 40.5
Sample A
42.7
Sample B
40.5
Sample C
45.6
Sample D
46.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 97.7
Samples: 4
Max nTPM: 103.3
Min nTPM: 92.9
Sample A
92.9
Sample A
103.3
Sample A
98.6
Sample A
95.9
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