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ARHGAP33
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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:23.5 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:8.9 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2586 Male, age 75, left hemisphere 20.8
2828 Female, age 72, unknown 16.7
1830 Male, age 51, unknown 16.5
1833 Male, age 53, unknown 16.5
1870 Female, age 42, unknown 16.5
2666 Male, age 74, left hemisphere 16.3
2219 Male, age 76, both hemispheres 16.1
1827 Male, age 72, unknown 15.1
2411 Female, age 72, unknown 15.1
2019 Male, age 18, unknown 13.4
Dorsal raphe nucleus
nTPM: 13.7
2750 Male, age 76, both hemispheres 17.4
2047 Male, age 72, unknown 14.1
1828 Male, age 53, unknown 12.8
2298 Female, age 72, unknown 12.8
2016 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 14.0
2849 Male, age 72, unknown 16.4
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 13.0
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Pedunculopontine tegmental nucleus
nTPM: 14.4
1921 Female, age 85, both hemispheres 15.3
2338 Male, age 61, both hemispheres 14.9
2334 Male, age 80, both hemispheres 13.2
Periaquaductal grey, anterior
nTPM: 15.2
2502 Female, age 75, unknown 16.9
1795 Male, age 51, unknown 15.6
1947 Male, age 18, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 14.5
1831 Male, age 72, unknown 15.8
2464 Female, age 72, unknown 15.0
2850 Male, age 76, both hemispheres 13.8
1840 Male, age 53, unknown 13.3
Periaquaductal grey, lateral
nTPM: 14.2
2053 Male, age 18, unknown 15.8
2272 Male, age 74, both hemispheres 13.6
2140 Male, age 76, both hemispheres 13.3
Pretectal area
nTPM: 14.6
2407 Male, age 75, both hemispheres 19.5
2825 Male, age 18, unknown 17.1
1815 Male, age 53, unknown 15.4
2667 Female, age 75, unknown 15.1
1816 Male, age 51, unknown 14.5
2224 Female, age 72, unknown 14.4
2316 Male, age 76, right hemisphere 13.7
2007 Male, age 72, unknown 13.4
1817 Female, age 42, unknown 13.0
1944 Female, age 72, unknown 12.9
2273 Male, age 74, both hemispheres 12.0
Red nucleus
nTPM: 16.4
2584 Male, age 75, left hemisphere 22.0
2588 Male, age 74, left hemisphere 19.0
2823 Male, age 76, right hemisphere 18.7
2769 Male, age 72, unknown 17.6
2227 Male, age 72, unknown 16.6
1865 Male, age 51, unknown 16.5
1904 Male, age 53, unknown 16.4
2785 Male, age 18, unknown 15.1
2503 Female, age 72, unknown 14.5
2725 Female, age 75, unknown 13.8
1954 Female, age 42, unknown 13.7
1821 Female, age 72, unknown 12.9
Substantia nigra
nTPM: 13.3
2583 Male, age 75, right hemisphere 17.3
2699 Male, age 18, unknown 15.5
2590 Female, age 75, unknown 14.4
2665 Male, age 74, both hemispheres 14.4
1941 Male, age 53, unknown 13.1
1851 Male, age 51, unknown 12.8
1889 Female, age 72, unknown 12.8
2409 Female, age 72, unknown 11.1
2241 Male, age 72, unknown 11.0
1916 Female, age 42, unknown 10.9
Superior colliculus
nTPM: 15.5
2664 Male, age 75, both hemispheres 20.0
1913 Female, age 42, unknown 18.0
1796 Male, age 53, unknown 15.8
1895 Male, age 76, right hemisphere 14.9
2261 Male, age 18, unknown 14.7
2587 Male, age 74, left hemisphere 14.7
1995 Male, age 72, unknown 14.5
1839 Male, age 51, unknown 14.1
2087 Female, age 72, unknown 14.1
2668 Female, age 75, unknown 14.1
Ventral tegmental area
nTPM: 15.2
2223 Female, age 72, unknown 20.6
1942 Male, age 51, unknown 15.6
2021 Male, age 53, unknown 15.0
2218 Male, age 76, both hemispheres 15.0
1915 Female, age 42, unknown 13.0
2410 Female, age 72, unknown 12.1

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 89.2
Min nTPM: 8.3
Std nTPM: 10.1
Median nTPM: 22.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 42.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 38.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 38.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 34.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 34.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 34.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 33.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 33.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 32.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 31.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 31.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 31.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 31.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 31.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 30.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 30.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 29.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 29.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 29.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 29.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 29.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 28.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 28.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 27.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 27.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 26.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 26.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 26.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 25.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 25.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 25.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 25.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 25.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 24.9
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 24.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 24.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 24.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 24.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 24.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 24.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 24.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 24.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 23.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 23.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 23.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 23.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 23.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 23.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 23.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 23.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 22.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 22.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 22.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 22.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 22.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 22.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 21.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 21.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 21.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 21.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 20.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 20.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 20.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 20.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 20.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 20.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 20.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 20.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 19.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 19.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 19.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 19.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 19.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 19.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 18.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 18.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 18.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 18.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 18.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 18.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 18.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 18.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 17.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 17.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 16.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 16.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 16.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 16.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 16.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 16.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 16.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 16.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 15.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 15.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 15.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 15.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 15.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 15.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 15.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 15.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 15.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 15.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 15.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 13.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 13.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 12.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 12.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 11.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 11.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 11.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 11.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 11.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 10.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 9.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 9.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 8.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.9
FF:10158-103A5 76 years, female 45.9

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.7
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 7.8
Sample A Female 9.0
Sample B Female 7.8
Sample C Male 14.9
Sample D Male 11.1
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 10.2
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 10.2
Sample D Male 8.1
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.4
Sample A Female 8.5
Sample B Female 7.4
Sample C Male 12.2
Sample D Male 9.6
Superior colliculi
nTPM: 7.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.2
Sample A Female 6.8
Sample B Female 6.2
Sample C Male 8.2
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.7
Sample A Male 10.6
Sample B Male 7.7
Sample C Female 8.2
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
74583174 Antisense, RP_051214_02_F12, Mouse strain C57BL/6J (56 days, male) 7.8
68843937 Antisense, RP_050217_02_E11, Mouse strain C57BL/6J (56 days, male) 5.5

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