MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:23.5 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:8.9 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2586 Male, age 75, left hemisphere 20.8
2828 Female, age 72, unknown 16.7
1830 Male, age 51, unknown 16.5
1833 Male, age 53, unknown 16.5
1870 Female, age 42, unknown 16.5
2666 Male, age 74, left hemisphere 16.3
2219 Male, age 76, both hemispheres 16.1
1827 Male, age 72, unknown 15.1
2411 Female, age 72, unknown 15.1
2019 Male, age 18, unknown 13.4
Dorsal raphe nucleus
nTPM: 13.7
2750 Male, age 76, both hemispheres 17.4
2047 Male, age 72, unknown 14.1
1828 Male, age 53, unknown 12.8
2298 Female, age 72, unknown 12.8
2016 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 14.0
2849 Male, age 72, unknown 16.4
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 13.0
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Pedunculopontine tegmental nucleus
nTPM: 14.4
1921 Female, age 85, both hemispheres 15.3
2338 Male, age 61, both hemispheres 14.9
2334 Male, age 80, both hemispheres 13.2
Periaquaductal grey, anterior
nTPM: 15.2
2502 Female, age 75, unknown 16.9
1795 Male, age 51, unknown 15.6
1947 Male, age 18, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 14.5
1831 Male, age 72, unknown 15.8
2464 Female, age 72, unknown 15.0
2850 Male, age 76, both hemispheres 13.8
1840 Male, age 53, unknown 13.3
Periaquaductal grey, lateral
nTPM: 14.2
2053 Male, age 18, unknown 15.8
2272 Male, age 74, both hemispheres 13.6
2140 Male, age 76, both hemispheres 13.3
Pretectal area
nTPM: 14.6
2407 Male, age 75, both hemispheres 19.5
2825 Male, age 18, unknown 17.1
1815 Male, age 53, unknown 15.4
2667 Female, age 75, unknown 15.1
1816 Male, age 51, unknown 14.5
2224 Female, age 72, unknown 14.4
2316 Male, age 76, right hemisphere 13.7
2007 Male, age 72, unknown 13.4
1817 Female, age 42, unknown 13.0
1944 Female, age 72, unknown 12.9
2273 Male, age 74, both hemispheres 12.0
Red nucleus
nTPM: 16.4
2584 Male, age 75, left hemisphere 22.0
2588 Male, age 74, left hemisphere 19.0
2823 Male, age 76, right hemisphere 18.7
2769 Male, age 72, unknown 17.6
2227 Male, age 72, unknown 16.6
1865 Male, age 51, unknown 16.5
1904 Male, age 53, unknown 16.4
2785 Male, age 18, unknown 15.1
2503 Female, age 72, unknown 14.5
2725 Female, age 75, unknown 13.8
1954 Female, age 42, unknown 13.7
1821 Female, age 72, unknown 12.9
Substantia nigra
nTPM: 13.3
2583 Male, age 75, right hemisphere 17.3
2699 Male, age 18, unknown 15.5
2590 Female, age 75, unknown 14.4
2665 Male, age 74, both hemispheres 14.4
1941 Male, age 53, unknown 13.1
1851 Male, age 51, unknown 12.8
1889 Female, age 72, unknown 12.8
2409 Female, age 72, unknown 11.1
2241 Male, age 72, unknown 11.0
1916 Female, age 42, unknown 10.9
Superior colliculus
nTPM: 15.5
2664 Male, age 75, both hemispheres 20.0
1913 Female, age 42, unknown 18.0
1796 Male, age 53, unknown 15.8
1895 Male, age 76, right hemisphere 14.9
2261 Male, age 18, unknown 14.7
2587 Male, age 74, left hemisphere 14.7
1995 Male, age 72, unknown 14.5
1839 Male, age 51, unknown 14.1
2087 Female, age 72, unknown 14.1
2668 Female, age 75, unknown 14.1
Ventral tegmental area
nTPM: 15.2
2223 Female, age 72, unknown 20.6
1942 Male, age 51, unknown 15.6
2021 Male, age 53, unknown 15.0
2218 Male, age 76, both hemispheres 15.0
1915 Female, age 42, unknown 13.0
2410 Female, age 72, unknown 12.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 89.2
Min nTPM: 8.3
Std nTPM: 10.1
Median nTPM: 22.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 42.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 38.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 38.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.9
FF:10158-103A5 76 years, female 45.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 7.8
Sample A Female 9.0
Sample B Female 7.8
Sample C Male 14.9
Sample D Male 11.1
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 10.2
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 10.2
Sample D Male 8.1
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.4
Sample A Female 8.5
Sample B Female 7.4
Sample C Male 12.2
Sample D Male 9.6
Superior colliculi
nTPM: 7.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.2
Sample A Female 6.8
Sample B Female 6.2
Sample C Male 8.2
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.7
Sample A Male 10.6
Sample B Male 7.7
Sample C Female 8.2
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
74583174 Antisense, RP_051214_02_F12, Mouse strain C57BL/6J (56 days, male) 7.8
68843937 Antisense, RP_050217_02_E11, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.