MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.2 nTPM
HPA:87.2 nTPM
GTEx:95.7 nTPM
FANTOM5:53.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.0
2586 Male, age 75, left hemisphere 89.1
1870 Female, age 42, unknown 88.8
2828 Female, age 72, unknown 88.2
1833 Male, age 53, unknown 85.1
2666 Male, age 74, left hemisphere 85.1
1830 Male, age 51, unknown 85.0
2219 Male, age 76, both hemispheres 84.9
2411 Female, age 72, unknown 84.9
1827 Male, age 72, unknown 84.6
2019 Male, age 18, unknown 84.3
Dorsal raphe nucleus
nTPM: 85.9
2047 Male, age 72, unknown 87.9
2298 Female, age 72, unknown 86.3
1828 Male, age 53, unknown 86.2
2016 Female, age 72, unknown 85.4
2750 Male, age 76, both hemispheres 83.8
Inferior colliculus
nTPM: 86.7
2849 Male, age 72, unknown 91.1
1890 Male, age 53, unknown 86.1
1848 Female, age 42, unknown 86.0
2097 Female, age 72, unknown 83.6
Median raphe nucleus
nTPM: 84.4
2220 Male, age 76, midline 84.4
Pedunculopontine tegmental nucleus
nTPM: 85.1
2338 Male, age 61, both hemispheres 85.8
2334 Male, age 80, both hemispheres 85.7
1921 Female, age 85, both hemispheres 83.7
Periaquaductal grey, anterior
nTPM: 84.5
2502 Female, age 75, unknown 84.9
1795 Male, age 51, unknown 84.7
1947 Male, age 18, unknown 83.9
Periaquaductal grey, dorsal
nTPM: 86.5
2850 Male, age 76, both hemispheres 88.7
1840 Male, age 53, unknown 86.4
1831 Male, age 72, unknown 85.8
2464 Female, age 72, unknown 85.1
Periaquaductal grey, lateral
nTPM: 85.7
2053 Male, age 18, unknown 87.6
2272 Male, age 74, both hemispheres 85.0
2140 Male, age 76, both hemispheres 84.6
Pretectal area
nTPM: 86.0
2407 Male, age 75, both hemispheres 88.3
2825 Male, age 18, unknown 87.4
1817 Female, age 42, unknown 87.1
2667 Female, age 75, unknown 87.0
2224 Female, age 72, unknown 86.4
2273 Male, age 74, both hemispheres 86.3
1816 Male, age 51, unknown 85.8
1815 Male, age 53, unknown 85.6
1944 Female, age 72, unknown 84.9
2007 Male, age 72, unknown 83.9
2316 Male, age 76, right hemisphere 83.3
Red nucleus
nTPM: 87.2
1904 Male, age 53, unknown 89.2
2503 Female, age 72, unknown 88.8
2769 Male, age 72, unknown 88.4
2725 Female, age 75, unknown 88.3
1865 Male, age 51, unknown 87.9
2227 Male, age 72, unknown 87.3
2823 Male, age 76, right hemisphere 87.1
2785 Male, age 18, unknown 86.4
1821 Female, age 72, unknown 86.1
1954 Female, age 42, unknown 86.1
2588 Male, age 74, left hemisphere 85.2
2584 Male, age 75, left hemisphere 85.0
Substantia nigra
nTPM: 85.2
2699 Male, age 18, unknown 90.5
1916 Female, age 42, unknown 86.8
2665 Male, age 74, both hemispheres 86.6
1889 Female, age 72, unknown 86.2
1851 Male, age 51, unknown 85.8
1941 Male, age 53, unknown 85.1
2583 Male, age 75, right hemisphere 84.0
2409 Female, age 72, unknown 83.5
2590 Female, age 75, unknown 82.4
2241 Male, age 72, unknown 80.8
Superior colliculus
nTPM: 86.4
2664 Male, age 75, both hemispheres 88.4
2587 Male, age 74, left hemisphere 88.3
1995 Male, age 72, unknown 88.2
1913 Female, age 42, unknown 87.6
2668 Female, age 75, unknown 86.8
1839 Male, age 51, unknown 86.3
1895 Male, age 76, right hemisphere 85.7
1796 Male, age 53, unknown 85.5
2087 Female, age 72, unknown 85.3
2261 Male, age 18, unknown 81.5
Ventral tegmental area
nTPM: 85.8
1915 Female, age 42, unknown 87.1
2223 Female, age 72, unknown 85.9
2021 Male, age 53, unknown 85.8
2410 Female, age 72, unknown 85.6
2218 Male, age 76, both hemispheres 85.4
1942 Male, age 51, unknown 85.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.7
Samples: 139

Max nTPM: 183.6
Min nTPM: 48.2
Std nTPM: 28.2
Median nTPM: 89.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 183.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 183.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 172.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 164.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 164.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 153.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 150.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 145.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 143.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 143.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 142.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

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The Human Protein Atlas

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