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TISSUE MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:87.2 nTPM
HPA:87.2 nTPM
GTEx:95.7 nTPM
FANTOM5:53.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.0
2586 Male, age 75, left hemisphere 89.1
1870 Female, age 42, unknown 88.8
2828 Female, age 72, unknown 88.2
1833 Male, age 53, unknown 85.1
2666 Male, age 74, left hemisphere 85.1
1830 Male, age 51, unknown 85.0
2219 Male, age 76, both hemispheres 84.9
2411 Female, age 72, unknown 84.9
1827 Male, age 72, unknown 84.6
2019 Male, age 18, unknown 84.3
Dorsal raphe nucleus
nTPM: 85.9
2047 Male, age 72, unknown 87.9
2298 Female, age 72, unknown 86.3
1828 Male, age 53, unknown 86.2
2016 Female, age 72, unknown 85.4
2750 Male, age 76, both hemispheres 83.8
Inferior colliculus
nTPM: 86.7
2849 Male, age 72, unknown 91.1
1890 Male, age 53, unknown 86.1
1848 Female, age 42, unknown 86.0
2097 Female, age 72, unknown 83.6
Median raphe nucleus
nTPM: 84.4
2220 Male, age 76, midline 84.4
Pedunculopontine tegmental nucleus
nTPM: 85.1
2338 Male, age 61, both hemispheres 85.8
2334 Male, age 80, both hemispheres 85.7
1921 Female, age 85, both hemispheres 83.7
Periaquaductal grey, anterior
nTPM: 84.5
2502 Female, age 75, unknown 84.9
1795 Male, age 51, unknown 84.7
1947 Male, age 18, unknown 83.9
Periaquaductal grey, dorsal
nTPM: 86.5
2850 Male, age 76, both hemispheres 88.7
1840 Male, age 53, unknown 86.4
1831 Male, age 72, unknown 85.8
2464 Female, age 72, unknown 85.1
Periaquaductal grey, lateral
nTPM: 85.7
2053 Male, age 18, unknown 87.6
2272 Male, age 74, both hemispheres 85.0
2140 Male, age 76, both hemispheres 84.6
Pretectal area
nTPM: 86.0
2407 Male, age 75, both hemispheres 88.3
2825 Male, age 18, unknown 87.4
1817 Female, age 42, unknown 87.1
2667 Female, age 75, unknown 87.0
2224 Female, age 72, unknown 86.4
2273 Male, age 74, both hemispheres 86.3
1816 Male, age 51, unknown 85.8
1815 Male, age 53, unknown 85.6
1944 Female, age 72, unknown 84.9
2007 Male, age 72, unknown 83.9
2316 Male, age 76, right hemisphere 83.3
Red nucleus
nTPM: 87.2
1904 Male, age 53, unknown 89.2
2503 Female, age 72, unknown 88.8
2769 Male, age 72, unknown 88.4
2725 Female, age 75, unknown 88.3
1865 Male, age 51, unknown 87.9
2227 Male, age 72, unknown 87.3
2823 Male, age 76, right hemisphere 87.1
2785 Male, age 18, unknown 86.4
1821 Female, age 72, unknown 86.1
1954 Female, age 42, unknown 86.1
2588 Male, age 74, left hemisphere 85.2
2584 Male, age 75, left hemisphere 85.0
Substantia nigra
nTPM: 85.2
2699 Male, age 18, unknown 90.5
1916 Female, age 42, unknown 86.8
2665 Male, age 74, both hemispheres 86.6
1889 Female, age 72, unknown 86.2
1851 Male, age 51, unknown 85.8
1941 Male, age 53, unknown 85.1
2583 Male, age 75, right hemisphere 84.0
2409 Female, age 72, unknown 83.5
2590 Female, age 75, unknown 82.4
2241 Male, age 72, unknown 80.8
Superior colliculus
nTPM: 86.4
2664 Male, age 75, both hemispheres 88.4
2587 Male, age 74, left hemisphere 88.3
1995 Male, age 72, unknown 88.2
1913 Female, age 42, unknown 87.6
2668 Female, age 75, unknown 86.8
1839 Male, age 51, unknown 86.3
1895 Male, age 76, right hemisphere 85.7
1796 Male, age 53, unknown 85.5
2087 Female, age 72, unknown 85.3
2261 Male, age 18, unknown 81.5
Ventral tegmental area
nTPM: 85.8
1915 Female, age 42, unknown 87.1
2223 Female, age 72, unknown 85.9
2021 Male, age 53, unknown 85.8
2410 Female, age 72, unknown 85.6
2218 Male, age 76, both hemispheres 85.4
1942 Male, age 51, unknown 85.1

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.7
Samples: 139

Max nTPM: 183.6
Min nTPM: 48.2
Std nTPM: 28.2
Median nTPM: 89.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 183.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 183.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 172.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 164.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 164.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 153.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 150.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 145.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 143.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 143.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 142.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 139.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 134.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 133.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 132.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 132.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 132.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 132.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 131.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 131.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 131.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 124.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 123.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 122.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 120.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 120.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 120.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 120.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 119.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 117.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 116.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 116.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 112.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 111.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 111.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 111.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 111.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 110.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 109.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 109.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 108.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 107.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 106.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 106.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 106.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 105.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 103.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 102.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 102.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 102.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 102.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 101.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 101.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 99.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 98.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 96.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 95.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 95.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 95.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 94.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 93.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 93.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 93.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 93.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 91.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 91.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 91.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 89.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 89.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 89.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 89.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 88.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 87.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 87.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 87.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 87.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 86.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 86.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 86.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 85.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 85.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 85.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 83.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 82.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 82.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 81.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 81.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 81.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 80.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 80.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 80.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 79.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 78.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 78.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 77.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 77.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 77.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 77.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 76.5
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 76.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 74.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 74.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 74.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 73.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 73.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 72.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 72.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 72.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 71.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 71.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 71.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 71.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 71.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 70.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 70.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 70.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 70.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 69.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 68.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 68.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 67.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 67.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 66.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 65.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 64.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 62.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 62.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 62.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 60.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 58.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 58.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 57.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 57.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 51.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 49.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.2
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

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