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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.9 nTPM
HPA:75.9 nTPM
GTEx:96.4 nTPM
FANTOM5:53.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.7
2586 Male, age 75, left hemisphere 78.3
1870 Female, age 42, unknown 77.3
2828 Female, age 72, unknown 77.0
2219 Male, age 76, both hemispheres 74.0
2666 Male, age 74, left hemisphere 73.9
1830 Male, age 51, unknown 73.5
1833 Male, age 53, unknown 73.4
2411 Female, age 72, unknown 73.3
2019 Male, age 18, unknown 73.1
1827 Male, age 72, unknown 72.9
Dorsal raphe nucleus
nTPM: 74.2
2304 Female, age 72, unknown 76.2
2047 Male, age 72, unknown 76.1
2298 Female, age 72, unknown 74.8
1828 Male, age 53, unknown 74.5
2016 Female, age 72, unknown 74.2
2408 Male, age 75, both hemispheres 73.5
2750 Male, age 76, both hemispheres 72.8
2593 Female, age 75, unknown 71.3
Inferior colliculus
nTPM: 73.9
2849 Male, age 72, unknown 79.3
1848 Female, age 42, unknown 74.6
1890 Male, age 53, unknown 74.4
1820 Female, age 72, unknown 73.9
2759 Female, age 72, unknown 73.0
1906 Male, age 76, both hemispheres 72.2
2097 Female, age 72, unknown 72.1
2385 Female, age 72, unknown 71.7
Median raphe nucleus
nTPM: 72.9
2225 Female, age 72, midline 77.7
2129 Male, age 18, midline 73.6
2220 Male, age 76, midline 73.5
2501 Female, age 75, midline 71.8
2317 Male, age 75, midline 67.7
Pedunculopontine tegmental nucleus
nTPM: 73.5
2705 Male, age 61, both hemispheres 77.0
2257 Male, age 80, both hemispheres 72.9
1921 Female, age 85, both hemispheres 72.5
1919 Male, age 76, both hemispheres 71.5
Periaquaductal grey, anterior
nTPM: 73.6
2502 Female, age 75, unknown 74.8
1795 Male, age 51, unknown 73.2
1947 Male, age 18, unknown 72.7
Periaquaductal grey, dorsal
nTPM: 74.5
2850 Male, age 76, both hemispheres 77.8
1874 Male, age 51, unknown 75.9
1840 Male, age 53, unknown 74.8
1831 Male, age 72, unknown 74.2
1814 Female, age 72, unknown 73.8
2500 Male, age 75, right hemisphere 73.7
2464 Female, age 72, unknown 73.5
1813 Female, age 42, unknown 72.2
Periaquaductal grey, lateral
nTPM: 74.2
2053 Male, age 18, unknown 76.4
2140 Male, age 76, both hemispheres 73.7
2319 Male, age 74, both hemispheres 72.6
Pretectal area
nTPM: 74.6
2407 Male, age 75, both hemispheres 77.4
2667 Female, age 75, unknown 77.0
2825 Male, age 18, unknown 76.2
1817 Female, age 42, unknown 75.7
2224 Female, age 72, unknown 74.9
1816 Male, age 51, unknown 74.3
2754 Male, age 76, right hemisphere 74.1
1815 Male, age 53, unknown 74.0
1944 Female, age 72, unknown 73.7
2318 Male, age 74, both hemispheres 73.0
2316 Male, age 76, right hemisphere 72.4
2007 Male, age 72, unknown 72.3
Red nucleus
nTPM: 75.9
2725 Female, age 75, unknown 78.4
1904 Male, age 53, unknown 77.5
2503 Female, age 72, unknown 77.2
2769 Male, age 72, unknown 76.6
1865 Male, age 51, unknown 76.4
2823 Male, age 76, right hemisphere 76.3
2227 Male, age 72, unknown 75.5
2785 Male, age 18, unknown 75.2
1821 Female, age 72, unknown 75.0
1954 Female, age 42, unknown 74.7
2584 Male, age 75, left hemisphere 74.1
2588 Male, age 74, left hemisphere 73.9
Substantia nigra
nTPM: 73.7
2699 Male, age 18, unknown 79.3
1916 Female, age 42, unknown 75.3
2665 Male, age 74, both hemispheres 75.3
1889 Female, age 72, unknown 75.1
1851 Male, age 51, unknown 74.2
1941 Male, age 53, unknown 73.5
2583 Male, age 75, right hemisphere 73.1
2590 Female, age 75, unknown 72.1
2409 Female, age 72, unknown 72.0
1786 Male, age 76, right hemisphere 71.4
2241 Male, age 72, unknown 69.2
Superior colliculus
nTPM: 75.0
2664 Male, age 75, both hemispheres 77.5
2587 Male, age 74, left hemisphere 77.0
2668 Female, age 75, unknown 76.8
1995 Male, age 72, unknown 76.5
1913 Female, age 42, unknown 76.1
1895 Male, age 76, right hemisphere 74.8
1839 Male, age 51, unknown 74.7
2087 Female, age 72, unknown 74.1
1796 Male, age 53, unknown 73.9
2739 Male, age 18, unknown 72.8
2261 Male, age 18, unknown 70.3
Ventral tegmental area
nTPM: 74.3
1915 Female, age 42, unknown 75.6
2589 Male, age 74, both hemispheres 75.5
1918 Male, age 72, unknown 74.8
2223 Female, age 72, unknown 74.8
2218 Male, age 76, both hemispheres 74.6
2021 Male, age 53, unknown 74.1
2410 Female, age 72, unknown 74.0
2585 Male, age 75, both hemispheres 73.9
1942 Male, age 51, unknown 73.5
2592 Female, age 75, unknown 72.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.4
Samples: 139

Max nTPM: 185.2
Min nTPM: 48.6
Std nTPM: 28.5
Median nTPM: 90.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 185.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 184.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 173.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 165.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 165.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 154.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 151.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 146.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 145.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 144.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 143.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

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The Human Protein Atlas

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