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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:88.3 nTPM
HPA:88.3 nTPM
GTEx:82.8 nTPM
FANTOM5:74.3 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 88.3
2565 Male, age 75, midline 90.8
1981 Female, age 72, midline 89.9
2048 Male, age 55, midline 87.1
2194 Female, age 79, both hemispheres 86.9
2816 Male, age 47, midline 86.8
Cervical spinal cord, dorsal horn
nTPM: 87.0
2721 Male, age 90, both hemispheres 91.0
2173 Female, age 72, unknown 88.0
2296 Male, age 66, both hemispheres 87.5
1877 Male, age 55, unknown 86.5
2297 Male, age 75, both hemispheres 85.1
2069 Male, age 47, both hemispheres 83.7
Cervical spinal cord, ventral horn
nTPM: 86.2
2098 Female, age 72, unknown 89.6
2809 Male, age 90, both hemispheres 87.0
2068 Male, age 55, unknown 85.6
2480 Male, age 75, both hemispheres 85.5
2820 Female, age 79, both hemispheres 85.2
2295 Male, age 66, both hemispheres 84.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 82.8
Samples: 159

Max nTPM: 148.0
Min nTPM: 32.5
Std nTPM: 19.3
Median nTPM: 80.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 148.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 141.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 136.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 133.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 128.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 125.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 124.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 120.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 118.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 115.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 114.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 112.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 110.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 110.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 110.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 106.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 103.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 103.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 103.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 101.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 101.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 99.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 99.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 99.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 98.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 97.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 97.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 97.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 97.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 96.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 96.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 96.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 95.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 94.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 93.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 93.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 91.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 90.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 90.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 90.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 89.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 89.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 89.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 89.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 88.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 88.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 88.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 88.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 87.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 87.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 87.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 86.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 86.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 86.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 86.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 85.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 85.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 85.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 85.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 85.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 85.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 85.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 84.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 83.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 83.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 83.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 82.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 82.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 82.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 81.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 81.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 81.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 80.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 80.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 80.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 80.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 80.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 80.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 79.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 79.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 79.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 79.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 78.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 78.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 77.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 77.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 77.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 77.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 76.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 76.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 76.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 76.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 75.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 75.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 75.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 74.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 74.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 74.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 74.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 73.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 73.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 73.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 73.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 72.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 71.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 71.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 70.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 69.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 69.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 68.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 68.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 68.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 67.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 67.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 67.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 67.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 66.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 66.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 65.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 65.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 64.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 64.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 63.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 63.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 62.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 62.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 62.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 62.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 61.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 61.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 61.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 60.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 60.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 59.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 59.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 58.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 58.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 57.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 56.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 52.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 50.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 50.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 49.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 46.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 32.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.3
FF:10181-103D1 60 years, female 108.7
FF:10159-103A6 76 years, female 39.8

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