ABOUTMENU
HELP
NEWS
GGCT
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:21.9 nTPM
HPA:21.9 nTPM
GTEx:17.7 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:4.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020735Antibody HPA029914
Glial cells Not detectedNot detected
Neuronal cells MediumLow


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.6
2713 Male, age 75, left hemisphere 19.5
2481 Female, age 94, left hemisphere 19.1
2846 Female, age 79, unknown 19.0
1854 Male, age 80, left hemisphere 18.9
1857 Female, age 85, left hemisphere 18.9
2306 Female, age 91, right hemisphere 18.4
1781 Male, age 74, unknown 18.3
2302 Male, age 61, right hemisphere 18.0
2301 Female, age 72, unknown 17.6
Claustrum
nTPM: 18.5
2198 Male, age 80, both hemispheres 19.5
2392 Female, age 94, both hemispheres 19.3
1956 Male, age 74, unknown 19.0
2491 Male, age 75, both hemispheres 18.9
2645 Female, age 72, unknown 18.7
2196 Female, age 79, unknown 18.2
2568 Male, age 61, both hemispheres 18.1
2307 Female, age 91, both hemispheres 17.3
2299 Female, age 85, both hemispheres 17.1
Globus pallidus, externus
nTPM: 18.3
2114 Female, age 85, right hemisphere 21.7
2395 Male, age 75, both hemispheres 19.2
2772 Female, age 79, unknown 18.4
2644 Female, age 94, right hemisphere 18.2
1996 Male, age 80, right hemisphere 18.1
2011 Female, age 91, left hemisphere 17.4
2646 Male, age 61, right hemisphere 16.9
2567 Female, age 72, unknown 16.4
Globus pallidus, internus
nTPM: 18.3
1997 Male, age 61, left hemisphere 19.0
2483 Female, age 94, right hemisphere 19.0
2778 Female, age 91, both hemispheres 18.9
2037 Male, age 80, right hemisphere 18.1
2714 Male, age 75, right hemisphere 18.1
1818 Male, age 74, unknown 17.9
2566 Female, age 72, unknown 17.6
2111 Female, age 85, right hemisphere 17.4
Nucleus accumbens
nTPM: 18.2
2305 Male, age 75, left hemisphere 19.7
1806 Female, age 85, left hemisphere 18.5
1856 Female, age 91, right hemisphere 18.2
2824 Male, age 61, right hemisphere 18.2
2698 Female, age 72, unknown 18.1
1783 Male, age 74, unknown 17.9
2732 Male, age 80, right hemisphere 17.8
2391 Female, age 94, left hemisphere 17.6
Nucleus basalis of Meynert
nTPM: 18.4
2200 Female, age 91, left hemisphere 19.2
2393 Male, age 80, right hemisphere 19.2
2821 Male, age 75, both hemispheres 18.7
2484 Female, age 94, left hemisphere 18.6
2842 Male, age 74, unknown 18.3
2300 Female, age 85, both hemispheres 17.8
2569 Male, age 61, both hemispheres 16.8
Nucleus of the diagonal band
nTPM: 21.9
2775 Male, age 80, right hemisphere 23.2
1812 Female, age 91, both hemispheres 22.5
2195 Female, age 85, both hemispheres 22.3
2029 Male, age 61, right hemisphere 22.0
1979 Male, age 74, unknown 19.4
Olfactory tubercle
nTPM: 20.4
1846 Male, age 80, right hemisphere 22.0
1998 Female, age 91, both hemispheres 21.5
2487 Female, age 94, left hemisphere 19.9
2856 Male, age 75, right hemisphere 18.4
Putamen
nTPM: 18.1
2482 Female, age 94, left hemisphere 19.7
2466 Female, age 79, unknown 18.6
1829 Male, age 74, unknown 18.3
1937 Female, age 91, right hemisphere 18.2
2647 Male, age 75, left hemisphere 18.2
1838 Male, age 80, right hemisphere 18.0
2490 Male, age 61, left hemisphere 17.7
2489 Female, age 72, unknown 17.4
2488 Female, age 85, left hemisphere 16.7
Septal nuclei
nTPM: 20.8
2031 Female, age 72, unknown 25.0
1960 Male, age 74, unknown 22.8
2009 Female, age 91, both hemispheres 22.0
2059 Female, age 85, both hemispheres 19.6
2394 Male, age 61, left hemisphere 19.6
2199 Male, age 80, right hemisphere 19.0
2629 Female, age 94, right hemisphere 17.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.5
Samples: 246

Max nTPM: 36.6
Min nTPM: 6.4
Std nTPM: 4.9
Median nTPM: 17.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 36.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 34.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 31.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 30.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 28.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 28.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 28.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 27.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 26.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.2
Samples: 246

Max nTPM: 27.0
Min nTPM: 3.2
Std nTPM: 4.0
Median nTPM: 17.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 27.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 26.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 26.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 25.7
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 25.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 25.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 25.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 25.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 25.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 24.4
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 24.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 17.7
Samples: 205

Max nTPM: 34.0
Min nTPM: 4.1
Std nTPM: 4.6
Median nTPM: 17.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 34.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 30.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 30.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 29.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 27.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 27.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 26.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 26.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 25.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 25.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 25.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.7
FF:10164-103B2 76 years, female 21.7
Nucleus accumbens
Scaled Tags Per Million: 31.3
FF:10037-101F1 23-56 years, mixed 31.3
Putamen
Scaled Tags Per Million: 20.8
FF:10176-103C5 60 years, female 20.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Caudate
nTPM: 5.5
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Female 6.0
Sample B Female 4.7
Sample C Male 6.1
Sample D Male 5.1
Putamen
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 4.7
Sample C Male 6.1
Sample D Male 5.0
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.0
Sample A Female 5.6
Sample B Female 5.4
Sample C Male 5.0
Sample D Male 7.2
Ventral pallidum
nTPM: 5.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.5
Sample A Female 5.5
Sample B Female 5.5
Sample C Male 4.5
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.2
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.6
Sample A Male 3.6
Sample B Male 3.6
Sample C Female 2.8
Sample D Female 2.6
Septum
nTPM: 4.4
Samples: 4

Max nTPM: 4.7
Min nTPM: 4.2
Sample A Male 4.4
Sample B Male 4.7
Sample C Female 4.3
Sample D Female 4.2
Ventral forebrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.0
Sample A Male 3.6
Sample B Male 3.0
Sample C Female 3.7
Sample D Female 4.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69447894 Antisense, RP_050419_02_C08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
69447894 Antisense, RP_050419_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.