MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:16.2 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:4.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2019 Male, age 18, unknown 18.6
2586 Male, age 75, left hemisphere 18.0
1827 Male, age 72, unknown 16.7
2411 Female, age 72, unknown 16.6
2828 Female, age 72, unknown 16.6
1870 Female, age 42, unknown 16.4
2219 Male, age 76, both hemispheres 16.4
2666 Male, age 74, left hemisphere 16.4
1833 Male, age 53, unknown 16.2
1830 Male, age 51, unknown 15.7
Dorsal raphe nucleus
nTPM: 16.5
2298 Female, age 72, unknown 17.2
2750 Male, age 76, both hemispheres 17.1
1828 Male, age 53, unknown 16.7
2047 Male, age 72, unknown 16.2
2016 Female, age 72, unknown 15.4
Inferior colliculus
nTPM: 16.2
2097 Female, age 72, unknown 17.3
1890 Male, age 53, unknown 16.1
1848 Female, age 42, unknown 16.0
2849 Male, age 72, unknown 15.4
Median raphe nucleus
nTPM: 16.9
2220 Male, age 76, midline 16.9
Pedunculopontine tegmental nucleus
nTPM: 16.7
2334 Male, age 80, both hemispheres 16.9
1921 Female, age 85, both hemispheres 16.6
2338 Male, age 61, both hemispheres 16.5
Periaquaductal grey, anterior
nTPM: 16.5
1795 Male, age 51, unknown 17.5
2502 Female, age 75, unknown 16.2
1947 Male, age 18, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 16.2
1831 Male, age 72, unknown 16.8
2464 Female, age 72, unknown 16.6
2850 Male, age 76, both hemispheres 15.7
1840 Male, age 53, unknown 15.6
Periaquaductal grey, lateral
nTPM: 16.6
2272 Male, age 74, both hemispheres 17.4
2053 Male, age 18, unknown 16.8
2140 Male, age 76, both hemispheres 15.6
Pretectal area
nTPM: 18.1
1817 Female, age 42, unknown 20.9
1816 Male, age 51, unknown 20.1
1815 Male, age 53, unknown 20.0
2007 Male, age 72, unknown 19.2
1944 Female, age 72, unknown 18.9
2273 Male, age 74, both hemispheres 17.7
2667 Female, age 75, unknown 17.4
2224 Female, age 72, unknown 16.4
2407 Male, age 75, both hemispheres 16.3
2316 Male, age 76, right hemisphere 16.1
2825 Male, age 18, unknown 15.6
Red nucleus
nTPM: 16.9
2785 Male, age 18, unknown 18.3
1821 Female, age 72, unknown 17.9
2584 Male, age 75, left hemisphere 17.2
1865 Male, age 51, unknown 17.1
1954 Female, age 42, unknown 17.0
2823 Male, age 76, right hemisphere 17.0
2503 Female, age 72, unknown 16.8
2725 Female, age 75, unknown 16.8
1904 Male, age 53, unknown 16.4
2769 Male, age 72, unknown 16.4
2588 Male, age 74, left hemisphere 16.0
2227 Male, age 72, unknown 15.5
Substantia nigra
nTPM: 17.6
2241 Male, age 72, unknown 19.4
1889 Female, age 72, unknown 18.9
1916 Female, age 42, unknown 17.9
1941 Male, age 53, unknown 17.8
2583 Male, age 75, right hemisphere 17.8
1851 Male, age 51, unknown 17.2
2409 Female, age 72, unknown 17.2
2590 Female, age 75, unknown 17.0
2665 Male, age 74, both hemispheres 16.6
2699 Male, age 18, unknown 16.5
Superior colliculus
nTPM: 17.0
2668 Female, age 75, unknown 18.1
2261 Male, age 18, unknown 18.0
2087 Female, age 72, unknown 17.7
1796 Male, age 53, unknown 17.6
1895 Male, age 76, right hemisphere 16.9
1995 Male, age 72, unknown 16.9
1913 Female, age 42, unknown 16.8
1839 Male, age 51, unknown 15.9
2587 Male, age 74, left hemisphere 15.9
2664 Male, age 75, both hemispheres 15.7
Ventral tegmental area
nTPM: 16.6
2223 Female, age 72, unknown 17.4
2410 Female, age 72, unknown 17.1
2218 Male, age 76, both hemispheres 16.8
1915 Female, age 42, unknown 16.5
1942 Male, age 51, unknown 16.2
2021 Male, age 53, unknown 15.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.2
Samples: 139

Max nTPM: 31.0
Min nTPM: 5.2
Std nTPM: 4.9
Median nTPM: 15.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 30.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 29.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 26.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 24.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.2
FF:10158-103A5 76 years, female 13.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.9
Pig sample Sample description nTPM
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.0
Sample A Female 7.1
Sample B Female 5.0
Sample C Male 5.1
Sample D Male 5.0
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 7.2
Min nTPM: 5.1
Sample B Female 5.3
Sample C Male 5.1
Sample D Male 7.2
Substantia nigra
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.9
Sample A Female 5.3
Sample B Female 4.9
Sample C Male 5.6
Sample D Male 5.0
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 5.8
Sample C Male 5.8
Sample D Male 6.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.9
Sample A Male 4.1
Sample B Male 4.4
Sample C Female 3.9
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69447894 Antisense, RP_050419_02_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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