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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:16.3 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:4.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.2
2019 Male, age 18, unknown 20.2
2586 Male, age 75, left hemisphere 19.3
1827 Male, age 72, unknown 18.2
2411 Female, age 72, unknown 18.1
2828 Female, age 72, unknown 18.0
2666 Male, age 74, left hemisphere 17.8
1870 Female, age 42, unknown 17.7
2219 Male, age 76, both hemispheres 17.7
1833 Male, age 53, unknown 17.6
1830 Male, age 51, unknown 17.1
Dorsal raphe nucleus
nTPM: 18.0
2408 Male, age 75, both hemispheres 19.2
2298 Female, age 72, unknown 18.6
2750 Male, age 76, both hemispheres 18.5
1828 Male, age 53, unknown 18.2
2047 Male, age 72, unknown 17.7
2593 Female, age 75, unknown 17.7
2304 Female, age 72, unknown 17.2
2016 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 18.2
1820 Female, age 72, unknown 20.1
2385 Female, age 72, unknown 18.9
2097 Female, age 72, unknown 18.7
2759 Female, age 72, unknown 18.4
1890 Male, age 53, unknown 17.6
1848 Female, age 42, unknown 17.3
1906 Male, age 76, both hemispheres 17.2
2849 Male, age 72, unknown 16.9
Median raphe nucleus
nTPM: 18.0
2317 Male, age 75, midline 19.3
2220 Male, age 76, midline 18.3
2225 Female, age 72, midline 18.0
2501 Female, age 75, midline 17.9
2129 Male, age 18, midline 16.5
Pedunculopontine tegmental nucleus
nTPM: 18.0
1919 Male, age 76, both hemispheres 18.4
1921 Female, age 85, both hemispheres 18.0
2705 Male, age 61, both hemispheres 17.9
2257 Male, age 80, both hemispheres 17.6
Periaquaductal grey, anterior
nTPM: 17.9
1795 Male, age 51, unknown 19.0
2502 Female, age 75, unknown 17.5
1947 Male, age 18, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 17.9
1813 Female, age 42, unknown 21.1
1831 Male, age 72, unknown 18.4
2464 Female, age 72, unknown 18.0
1814 Female, age 72, unknown 17.9
1874 Male, age 51, unknown 17.5
1840 Male, age 53, unknown 17.0
2850 Male, age 76, both hemispheres 17.0
2500 Male, age 75, right hemisphere 16.6
Periaquaductal grey, lateral
nTPM: 17.9
2319 Male, age 74, both hemispheres 18.6
2053 Male, age 18, unknown 18.3
2140 Male, age 76, both hemispheres 16.9
Pretectal area
nTPM: 19.2
1817 Female, age 42, unknown 22.4
1815 Male, age 53, unknown 21.6
1816 Male, age 51, unknown 21.6
2007 Male, age 72, unknown 21.0
1944 Female, age 72, unknown 20.4
2667 Female, age 75, unknown 18.7
2318 Male, age 74, both hemispheres 18.2
2224 Female, age 72, unknown 17.9
2407 Male, age 75, both hemispheres 17.6
2316 Male, age 76, right hemisphere 17.4
2825 Male, age 18, unknown 17.1
2754 Male, age 76, right hemisphere 16.9
Red nucleus
nTPM: 18.3
2785 Male, age 18, unknown 19.9
1821 Female, age 72, unknown 19.4
1865 Male, age 51, unknown 18.5
2584 Male, age 75, left hemisphere 18.5
1954 Female, age 42, unknown 18.4
2823 Male, age 76, right hemisphere 18.4
2503 Female, age 72, unknown 18.3
2725 Female, age 75, unknown 18.1
2769 Male, age 72, unknown 18.0
1904 Male, age 53, unknown 17.9
2588 Male, age 74, left hemisphere 17.4
2227 Male, age 72, unknown 17.0
Substantia nigra
nTPM: 19.0
2241 Male, age 72, unknown 21.2
1889 Female, age 72, unknown 20.3
1916 Female, age 42, unknown 19.3
1941 Male, age 53, unknown 19.3
2583 Male, age 75, right hemisphere 19.0
1786 Male, age 76, right hemisphere 18.7
2409 Female, age 72, unknown 18.7
1851 Male, age 51, unknown 18.6
2590 Female, age 75, unknown 18.3
2665 Male, age 74, both hemispheres 18.0
2699 Male, age 18, unknown 18.0
Superior colliculus
nTPM: 18.4
2261 Male, age 18, unknown 19.6
2668 Female, age 75, unknown 19.4
2739 Male, age 18, unknown 19.2
1796 Male, age 53, unknown 19.1
2087 Female, age 72, unknown 19.1
1995 Male, age 72, unknown 18.5
1895 Male, age 76, right hemisphere 18.2
1913 Female, age 42, unknown 18.2
2587 Male, age 74, left hemisphere 17.3
1839 Male, age 51, unknown 17.2
2664 Male, age 75, both hemispheres 17.0
Ventral tegmental area
nTPM: 17.9
2223 Female, age 72, unknown 18.8
2410 Female, age 72, unknown 18.5
2592 Female, age 75, unknown 18.5
2218 Male, age 76, both hemispheres 18.1
1915 Female, age 42, unknown 17.9
2589 Male, age 74, both hemispheres 17.8
1942 Male, age 51, unknown 17.6
2585 Male, age 75, both hemispheres 17.4
1918 Male, age 72, unknown 17.3
2021 Male, age 53, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 31.2
Min nTPM: 5.2
Std nTPM: 4.9
Median nTPM: 16.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 30.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 30.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 26.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 24.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.2
FF:10158-103A5 76 years, female 13.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.9
Pig sample Sample description nTPM
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.0
Sample A Female 7.1
Sample B Female 5.0
Sample C Male 5.1
Sample D Male 5.0
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 7.2
Min nTPM: 5.1
Sample B Female 5.3
Sample C Male 5.1
Sample D Male 7.2
Substantia nigra
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.9
Sample A Female 5.3
Sample B Female 4.9
Sample C Male 5.6
Sample D Male 5.0
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 5.8
Sample C Male 5.8
Sample D Male 6.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.9
Sample A Male 4.1
Sample B Male 4.4
Sample C Female 3.9
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69447894 Antisense, RP_050419_02_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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