MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:36.8 nTPM
GTEx:26.1 nTPM
FANTOM5:145.9 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:62.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.0
2019 Male, age 18, unknown 30.8
2828 Female, age 72, unknown 30.6
1833 Male, age 53, unknown 30.2
1870 Female, age 42, unknown 30.2
2666 Male, age 74, left hemisphere 30.2
1830 Male, age 51, unknown 30.1
2586 Male, age 75, left hemisphere 29.6
1827 Male, age 72, unknown 28.6
2411 Female, age 72, unknown 27.3
2219 Male, age 76, both hemispheres 22.8
Dorsal raphe nucleus
nTPM: 29.7
2016 Female, age 72, unknown 33.9
2298 Female, age 72, unknown 32.0
1828 Male, age 53, unknown 31.0
2047 Male, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 22.1
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 32.1
1890 Male, age 53, unknown 31.1
1848 Female, age 42, unknown 29.3
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 28.7
1795 Male, age 51, unknown 32.8
1947 Male, age 18, unknown 29.1
2502 Female, age 75, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 31.4
1831 Male, age 72, unknown 36.3
2464 Female, age 72, unknown 30.3
1840 Male, age 53, unknown 29.4
2850 Male, age 76, both hemispheres 29.4
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 39.6
2140 Male, age 76, both hemispheres 37.4
2053 Male, age 18, unknown 33.3
Pretectal area
nTPM: 29.2
2273 Male, age 74, both hemispheres 45.1
2667 Female, age 75, unknown 36.3
2407 Male, age 75, both hemispheres 33.4
2224 Female, age 72, unknown 31.3
2825 Male, age 18, unknown 29.6
1815 Male, age 53, unknown 25.9
1817 Female, age 42, unknown 25.2
1944 Female, age 72, unknown 24.9
1816 Male, age 51, unknown 23.4
2007 Male, age 72, unknown 23.3
2316 Male, age 76, right hemisphere 23.1
Red nucleus
nTPM: 31.0
1954 Female, age 42, unknown 35.9
1904 Male, age 53, unknown 34.5
2503 Female, age 72, unknown 34.2
1865 Male, age 51, unknown 33.5
1821 Female, age 72, unknown 31.7
2227 Male, age 72, unknown 31.6
2769 Male, age 72, unknown 31.5
2725 Female, age 75, unknown 31.2
2785 Male, age 18, unknown 29.5
2588 Male, age 74, left hemisphere 28.2
2584 Male, age 75, left hemisphere 27.9
2823 Male, age 76, right hemisphere 22.3
Substantia nigra
nTPM: 30.4
2409 Female, age 72, unknown 40.3
2583 Male, age 75, right hemisphere 35.0
2590 Female, age 75, unknown 32.5
2699 Male, age 18, unknown 32.2
1851 Male, age 51, unknown 31.2
1916 Female, age 42, unknown 31.2
2241 Male, age 72, unknown 27.2
2665 Male, age 74, both hemispheres 25.9
1889 Female, age 72, unknown 24.5
1941 Male, age 53, unknown 23.9
Superior colliculus
nTPM: 29.6
1995 Male, age 72, unknown 34.9
1796 Male, age 53, unknown 34.1
1913 Female, age 42, unknown 33.3
2664 Male, age 75, both hemispheres 32.4
2587 Male, age 74, left hemisphere 30.9
2087 Female, age 72, unknown 28.4
2261 Male, age 18, unknown 28.0
1839 Male, age 51, unknown 26.7
2668 Female, age 75, unknown 24.5
1895 Male, age 76, right hemisphere 22.5
Ventral tegmental area
nTPM: 28.3
1915 Female, age 42, unknown 34.7
2223 Female, age 72, unknown 28.7
2021 Male, age 53, unknown 27.9
2410 Female, age 72, unknown 27.9
1942 Male, age 51, unknown 27.8
2218 Male, age 76, both hemispheres 22.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 139

Max nTPM: 54.6
Min nTPM: 12.8
Std nTPM: 7.0
Median nTPM: 24.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 54.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 42.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 42.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 39.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 39.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 38.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 145.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.9
FF:10158-103A5 76 years, female 145.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.7
Sample A Female 28.0
Sample B Female 25.7
Sample C Male 26.1
Sample D Male 34.7
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.4
Min nTPM: 26.4
Sample A Female 31.4
Sample B Female 31.3
Sample C Male 26.4
Sample D Male 27.4
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.9
Min nTPM: 24.8
Sample B Female 27.3
Sample C Male 28.9
Sample D Male 24.8
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 35.1
Min nTPM: 24.2
Sample A Female 35.1
Sample B Female 24.2
Sample C Male 28.5
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.0
Samples: 4

Max nTPM: 68.5
Min nTPM: 57.7
Sample A Male 59.8
Sample B Male 62.1
Sample C Female 68.5
Sample D Female 57.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68861742 Antisense, RP_050224_02_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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