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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:26.1 nTPM
HPA Brain:36.8 nTPM
GTEx:26.1 nTPM
FANTOM5:145.9 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:62.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.0
2019 Male, age 18, unknown 30.8
2828 Female, age 72, unknown 30.6
1833 Male, age 53, unknown 30.2
1870 Female, age 42, unknown 30.2
2666 Male, age 74, left hemisphere 30.2
1830 Male, age 51, unknown 30.1
2586 Male, age 75, left hemisphere 29.6
1827 Male, age 72, unknown 28.6
2411 Female, age 72, unknown 27.3
2219 Male, age 76, both hemispheres 22.8
Dorsal raphe nucleus
nTPM: 29.7
2016 Female, age 72, unknown 33.9
2298 Female, age 72, unknown 32.0
1828 Male, age 53, unknown 31.0
2047 Male, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 22.1
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 32.1
1890 Male, age 53, unknown 31.1
1848 Female, age 42, unknown 29.3
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 28.7
1795 Male, age 51, unknown 32.8
1947 Male, age 18, unknown 29.1
2502 Female, age 75, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 31.4
1831 Male, age 72, unknown 36.3
2464 Female, age 72, unknown 30.3
1840 Male, age 53, unknown 29.4
2850 Male, age 76, both hemispheres 29.4
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 39.6
2140 Male, age 76, both hemispheres 37.4
2053 Male, age 18, unknown 33.3
Pretectal area
nTPM: 29.2
2273 Male, age 74, both hemispheres 45.1
2667 Female, age 75, unknown 36.3
2407 Male, age 75, both hemispheres 33.4
2224 Female, age 72, unknown 31.3
2825 Male, age 18, unknown 29.6
1815 Male, age 53, unknown 25.9
1817 Female, age 42, unknown 25.2
1944 Female, age 72, unknown 24.9
1816 Male, age 51, unknown 23.4
2007 Male, age 72, unknown 23.3
2316 Male, age 76, right hemisphere 23.1
Red nucleus
nTPM: 31.0
1954 Female, age 42, unknown 35.9
1904 Male, age 53, unknown 34.5
2503 Female, age 72, unknown 34.2
1865 Male, age 51, unknown 33.5
1821 Female, age 72, unknown 31.7
2227 Male, age 72, unknown 31.6
2769 Male, age 72, unknown 31.5
2725 Female, age 75, unknown 31.2
2785 Male, age 18, unknown 29.5
2588 Male, age 74, left hemisphere 28.2
2584 Male, age 75, left hemisphere 27.9
2823 Male, age 76, right hemisphere 22.3
Substantia nigra
nTPM: 30.4
2409 Female, age 72, unknown 40.3
2583 Male, age 75, right hemisphere 35.0
2590 Female, age 75, unknown 32.5
2699 Male, age 18, unknown 32.2
1851 Male, age 51, unknown 31.2
1916 Female, age 42, unknown 31.2
2241 Male, age 72, unknown 27.2
2665 Male, age 74, both hemispheres 25.9
1889 Female, age 72, unknown 24.5
1941 Male, age 53, unknown 23.9
Superior colliculus
nTPM: 29.6
1995 Male, age 72, unknown 34.9
1796 Male, age 53, unknown 34.1
1913 Female, age 42, unknown 33.3
2664 Male, age 75, both hemispheres 32.4
2587 Male, age 74, left hemisphere 30.9
2087 Female, age 72, unknown 28.4
2261 Male, age 18, unknown 28.0
1839 Male, age 51, unknown 26.7
2668 Female, age 75, unknown 24.5
1895 Male, age 76, right hemisphere 22.5
Ventral tegmental area
nTPM: 28.3
1915 Female, age 42, unknown 34.7
2223 Female, age 72, unknown 28.7
2021 Male, age 53, unknown 27.9
2410 Female, age 72, unknown 27.9
1942 Male, age 51, unknown 27.8
2218 Male, age 76, both hemispheres 22.8

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 139

Max nTPM: 54.6
Min nTPM: 12.8
Std nTPM: 7.0
Median nTPM: 24.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 54.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 42.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 42.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 39.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 39.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 38.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 37.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 35.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 35.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 35.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 35.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 34.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 33.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 32.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 32.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 31.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 31.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 31.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 30.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 30.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 30.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 30.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 29.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 29.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 28.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 28.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 27.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 27.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 27.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 27.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 27.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 27.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 27.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 26.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 26.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 26.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 26.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 26.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 25.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 25.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 25.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 25.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 24.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 24.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 24.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 24.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 24.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 24.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 24.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 23.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 23.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 23.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 23.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 23.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 23.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 23.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 23.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 23.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 23.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 23.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 23.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 23.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 22.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 22.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 22.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 22.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 22.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 22.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 22.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 22.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 22.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 22.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 22.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 22.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 22.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 22.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 22.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 21.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 21.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 21.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 21.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 21.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 21.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 21.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 20.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 20.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 20.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 20.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 19.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 19.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 19.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 19.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 19.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 19.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 19.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 18.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 18.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 17.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 17.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 17.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 16.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 16.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 15.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 15.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 12.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 145.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.9
FF:10158-103A5 76 years, female 145.9

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 29.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.7
Sample A Female 28.0
Sample B Female 25.7
Sample C Male 26.1
Sample D Male 34.7
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.4
Min nTPM: 26.4
Sample A Female 31.4
Sample B Female 31.3
Sample C Male 26.4
Sample D Male 27.4
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.9
Min nTPM: 24.8
Sample B Female 27.3
Sample C Male 28.9
Sample D Male 24.8
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 35.1
Min nTPM: 24.2
Sample A Female 35.1
Sample B Female 24.2
Sample C Male 28.5
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 62.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.0
Samples: 4

Max nTPM: 68.5
Min nTPM: 57.7
Sample A Male 59.8
Sample B Male 62.1
Sample C Female 68.5
Sample D Female 57.7

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68861742 Antisense, RP_050224_02_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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