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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:13.0 nTPM
GTEx:13.0 nTPM
FANTOM5:53.6 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:107.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 13.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 13.0
Samples: 105

Max nTPM: 24.4
Min nTPM: 4.5
Std nTPM: 3.6
Median nTPM: 0.0
308_1 70 years, female 24.4
414_1 84 years, female 22.6
413_1 59 years, female 20.9
324_1 76 years, male 20.8
466_1 57 years, female 20.4
347_1 72 years, male 19.5
265_1 87 years, male 19.1
266_1 85 years, male 19.1
404_1 82 years, female 18.4
189_1 76 years, male 17.4
406_1 79 years, male 17.2
499_1 55 years, female 16.8
415_1 77 years, female 16.7
229_1 69 years, female 16.5
503_1 68 years, male 16.5
177_1 74 years, male 16.4
384_1 83 years, male 16.4
526_1 61 years, male 16.4
307_1 66 years, female 16.1
321_1 62 years, female 16.0
447_1 81 years, male 16.0
126_1 63 years, male 15.8
162_1 79 years, female 15.8
425_1 59 years, female 15.8
42_1 85 years, male 15.5
348_1 84 years, male 15.5
218_1 71 years, female 15.3
396_1 62 years, male 15.3
468_1 89 years, male 15.2
480_1 63 years, male 15.2
351_1 91 years, male 15.0
115_1 83 years, male 14.7
386_1 76 years, male 14.7
246_1 77 years, male 14.6
517_1 88 years, male 14.6
314_1 67 years, male 14.5
506_1 65 years, male 14.5
2_1 77 years, female 14.2
172_1 72 years, female 14.2
376_1 75 years, female 14.2
352_1 62 years, male 13.6
375_1 74 years, female 13.6
356_1 87 years, female 13.5
292_1 71 years, male 13.3
394_1 75 years, female 13.3
495_1 57 years, female 13.3
518_1 75 years, female 13.2
237_1 82 years, male 13.1
354_1 81 years, female 13.1
355_1 70 years, female 13.0
491_1 89 years, female 13.0
335_1 73 years, female 12.9
251_1 78 years, male 12.8
317_1 60 years, male 12.8
350_1 84 years, female 12.7
389_1 86 years, female 12.7
149_1 88 years, male 12.6
99_1 64 years, male 12.5
293_1 68 years, female 12.5
163_1 78 years, male 12.2
353_1 82 years, female 12.2
254_1 77 years, female 12.1
377_1 82 years, female 12.1
379_1 60 years, male 12.1
217_1 76 years, male 11.8
319_1 81 years, male 11.8
349_1 83 years, male 11.8
288_1 66 years, female 11.7
405_1 91 years, male 11.5
89_1 63 years, male 11.3
286_1 68 years, female 11.3
316_1 62 years, male 11.0
318_1 68 years, male 11.0
119_1 70 years, female 10.9
153_1 70 years, female 10.8
145_1 84 years, male 10.7
243_1 75 years, male 10.6
32_1 67 years, male 10.4
17_1 71 years, male 10.3
295_1 61 years, female 10.0
452_1 88 years, female 10.0
501_1 88 years, male 10.0
264_1 73 years, female 9.9
81_1 67 years, male 9.7
142_1 61 years, female 9.6
173_1 67 years, male 9.6
311_1 78 years, male 9.5
315_1 62 years, female 9.1
9_1 66 years, female 8.9
35_1 74 years, female 8.8
291_1 76 years, male 8.8
117_1 61 years, male 8.6
322_1 76 years, male 8.6
139_1 64 years, female 8.5
137_1 83 years, male 8.4
18_1 88 years, male 8.3
6_1 73 years, female 7.6
4_1 88 years, female 7.5
120_1 70 years, female 7.5
490_1 67 years, female 7.4
43_1 64 years, female 7.2
41_1 94 years, female 7.0
109_1 81 years, female 6.9
313_1 79 years, female 6.6
320_1 89 years, female 4.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 53.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 53.6
FF:10030-101E3 24-65 years, mixed 53.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 24.8
Pig sample Sample description nTPM
Retina
nTPM: 24.8
Samples: 4

Max nTPM: 30.7
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 23.9
Sample C Male 30.7
Sample D Male 22.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 107.0
Mouse sample Sample description nTPM
Retina
nTPM: 107.0
Samples: 4

Max nTPM: 114.8
Min nTPM: 91.1
Sample A Male 91.1
Sample B Male 114.8
Sample C Female 114.2
Sample D Female 107.9

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by the Knut & Alice Wallenberg Foundation.