MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA:13.5 nTPM
GTEx:16.1 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:3.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
1827 Male, age 72, unknown 11.7
2586 Male, age 75, left hemisphere 11.6
2411 Female, age 72, unknown 11.3
1830 Male, age 51, unknown 11.1
1833 Male, age 53, unknown 11.1
1870 Female, age 42, unknown 11.1
2219 Male, age 76, both hemispheres 11.1
2666 Male, age 74, left hemisphere 11.1
2828 Female, age 72, unknown 10.9
2019 Male, age 18, unknown 10.1
Dorsal raphe nucleus
nTPM: 13.1
2016 Female, age 72, unknown 14.5
2298 Female, age 72, unknown 14.4
2047 Male, age 72, unknown 13.0
1828 Male, age 53, unknown 12.4
2750 Male, age 76, both hemispheres 11.0
Inferior colliculus
nTPM: 13.5
1848 Female, age 42, unknown 14.9
2097 Female, age 72, unknown 13.9
2849 Male, age 72, unknown 13.4
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Pedunculopontine tegmental nucleus
nTPM: 11.3
1921 Female, age 85, both hemispheres 12.0
2334 Male, age 80, both hemispheres 11.6
2338 Male, age 61, both hemispheres 10.2
Periaquaductal grey, anterior
nTPM: 13.1
2502 Female, age 75, unknown 13.5
1795 Male, age 51, unknown 13.2
1947 Male, age 18, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 13.1
1840 Male, age 53, unknown 15.6
2464 Female, age 72, unknown 13.0
2850 Male, age 76, both hemispheres 12.1
1831 Male, age 72, unknown 11.7
Periaquaductal grey, lateral
nTPM: 12.2
2272 Male, age 74, both hemispheres 12.7
2140 Male, age 76, both hemispheres 12.2
2053 Male, age 18, unknown 11.8
Pretectal area
nTPM: 11.4
2224 Female, age 72, unknown 13.4
2273 Male, age 74, both hemispheres 13.2
2825 Male, age 18, unknown 13.0
2407 Male, age 75, both hemispheres 12.0
1817 Female, age 42, unknown 11.9
2316 Male, age 76, right hemisphere 10.9
2007 Male, age 72, unknown 10.6
1815 Male, age 53, unknown 10.3
1816 Male, age 51, unknown 10.3
2667 Female, age 75, unknown 9.8
1944 Female, age 72, unknown 9.5
Red nucleus
nTPM: 11.2
1821 Female, age 72, unknown 13.1
2725 Female, age 75, unknown 12.5
1954 Female, age 42, unknown 12.4
2503 Female, age 72, unknown 12.3
2227 Male, age 72, unknown 11.6
2769 Male, age 72, unknown 11.3
2823 Male, age 76, right hemisphere 10.8
1904 Male, age 53, unknown 10.7
2785 Male, age 18, unknown 10.6
1865 Male, age 51, unknown 10.3
2588 Male, age 74, left hemisphere 9.8
2584 Male, age 75, left hemisphere 9.7
Substantia nigra
nTPM: 12.0
2699 Male, age 18, unknown 13.6
1851 Male, age 51, unknown 13.3
2590 Female, age 75, unknown 12.9
2241 Male, age 72, unknown 12.3
2665 Male, age 74, both hemispheres 12.1
1916 Female, age 42, unknown 11.9
1941 Male, age 53, unknown 11.9
2583 Male, age 75, right hemisphere 11.4
1889 Female, age 72, unknown 10.6
2409 Female, age 72, unknown 9.6
Superior colliculus
nTPM: 11.0
1796 Male, age 53, unknown 11.9
1895 Male, age 76, right hemisphere 11.9
1839 Male, age 51, unknown 11.7
2664 Male, age 75, both hemispheres 11.7
2587 Male, age 74, left hemisphere 11.5
1995 Male, age 72, unknown 11.4
2261 Male, age 18, unknown 10.4
2668 Female, age 75, unknown 10.3
2087 Female, age 72, unknown 9.8
1913 Female, age 42, unknown 9.4
Ventral tegmental area
nTPM: 12.1
1915 Female, age 42, unknown 12.6
2021 Male, age 53, unknown 12.6
2223 Female, age 72, unknown 12.6
1942 Male, age 51, unknown 12.0
2218 Male, age 76, both hemispheres 11.8
2410 Female, age 72, unknown 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 42.9
Min nTPM: 6.0
Std nTPM: 5.3
Median nTPM: 15.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 42.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 30.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 29.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 27.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 25.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 25.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.7
FF:10158-103A5 76 years, female 17.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.1
Sample A Female 2.8
Sample B Female 3.5
Sample C Male 2.3
Sample D Male 2.1
Periaqueductal gray
nTPM: 1.9
Samples: 3

Max nTPM: 2.4
Min nTPM: 1.5
Sample B Female 2.4
Sample C Male 1.7
Sample D Male 1.5
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Female 3.0
Sample B Female 2.0
Sample C Male 2.6
Sample D Male 3.1
Superior colliculi
nTPM: 3.5
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.4
Sample A Female 3.6
Sample B Female 2.8
Sample C Male 5.2
Sample D Male 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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