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PNPLA4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:16.2 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:3.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.6
2586 Male, age 75, left hemisphere 11.3
1827 Male, age 72, unknown 11.0
2411 Female, age 72, unknown 11.0
2666 Male, age 74, left hemisphere 10.9
2219 Male, age 76, both hemispheres 10.8
1830 Male, age 51, unknown 10.5
1870 Female, age 42, unknown 10.4
1833 Male, age 53, unknown 10.3
2828 Female, age 72, unknown 10.1
2019 Male, age 18, unknown 9.5
Dorsal raphe nucleus
nTPM: 12.1
2298 Female, age 72, unknown 14.0
2016 Female, age 72, unknown 13.5
2304 Female, age 72, unknown 13.2
2047 Male, age 72, unknown 12.3
1828 Male, age 53, unknown 11.6
2408 Male, age 75, both hemispheres 10.9
2750 Male, age 76, both hemispheres 10.7
2593 Female, age 75, unknown 10.3
Inferior colliculus
nTPM: 12.0
1848 Female, age 42, unknown 14.2
2097 Female, age 72, unknown 13.5
2385 Female, age 72, unknown 12.7
2759 Female, age 72, unknown 12.7
2849 Male, age 72, unknown 12.6
1890 Male, age 53, unknown 11.1
1820 Female, age 72, unknown 9.5
1906 Male, age 76, both hemispheres 9.4
Median raphe nucleus
nTPM: 11.5
2225 Female, age 72, midline 13.4
2317 Male, age 75, midline 12.2
2129 Male, age 18, midline 11.9
2220 Male, age 76, midline 10.7
2501 Female, age 75, midline 9.3
Pedunculopontine tegmental nucleus
nTPM: 11.2
1921 Female, age 85, both hemispheres 11.8
2257 Male, age 80, both hemispheres 11.3
1919 Male, age 76, both hemispheres 10.9
2705 Male, age 61, both hemispheres 10.7
Periaquaductal grey, anterior
nTPM: 13.0
2502 Female, age 75, unknown 14.2
1795 Male, age 51, unknown 12.6
1947 Male, age 18, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 12.2
1840 Male, age 53, unknown 14.7
1814 Female, age 72, unknown 13.6
2464 Female, age 72, unknown 12.7
2850 Male, age 76, both hemispheres 11.8
1874 Male, age 51, unknown 11.7
1831 Male, age 72, unknown 11.1
2500 Male, age 75, right hemisphere 10.9
1813 Female, age 42, unknown 10.8
Periaquaductal grey, lateral
nTPM: 11.0
2140 Male, age 76, both hemispheres 11.9
2053 Male, age 18, unknown 11.2
2319 Male, age 74, both hemispheres 9.9
Pretectal area
nTPM: 10.5
2224 Female, age 72, unknown 13.0
2825 Male, age 18, unknown 12.4
2407 Male, age 75, both hemispheres 11.6
1817 Female, age 42, unknown 11.3
2316 Male, age 76, right hemisphere 10.6
2754 Male, age 76, right hemisphere 10.5
2667 Female, age 75, unknown 10.2
2007 Male, age 72, unknown 9.9
1816 Male, age 51, unknown 9.8
1815 Male, age 53, unknown 9.5
1944 Female, age 72, unknown 8.7
2318 Male, age 74, both hemispheres 8.4
Red nucleus
nTPM: 10.8
2725 Female, age 75, unknown 13.1
1821 Female, age 72, unknown 12.1
2503 Female, age 72, unknown 11.9
1954 Female, age 42, unknown 11.7
2227 Male, age 72, unknown 10.9
2769 Male, age 72, unknown 10.6
2823 Male, age 76, right hemisphere 10.5
2785 Male, age 18, unknown 10.0
1904 Male, age 53, unknown 9.9
1865 Male, age 51, unknown 9.8
2588 Male, age 74, left hemisphere 9.5
2584 Male, age 75, left hemisphere 9.3
Substantia nigra
nTPM: 11.3
2590 Female, age 75, unknown 13.6
2699 Male, age 18, unknown 13.0
1851 Male, age 51, unknown 12.7
2665 Male, age 74, both hemispheres 11.9
2241 Male, age 72, unknown 11.6
1916 Female, age 42, unknown 11.3
1941 Male, age 53, unknown 11.1
2583 Male, age 75, right hemisphere 11.1
1889 Female, age 72, unknown 9.8
1786 Male, age 76, right hemisphere 9.7
2409 Female, age 72, unknown 9.2
Superior colliculus
nTPM: 10.5
1895 Male, age 76, right hemisphere 11.6
2664 Male, age 75, both hemispheres 11.4
2587 Male, age 74, left hemisphere 11.3
1839 Male, age 51, unknown 11.2
1796 Male, age 53, unknown 11.0
1995 Male, age 72, unknown 10.7
2668 Female, age 75, unknown 10.7
2261 Male, age 18, unknown 9.8
2739 Male, age 18, unknown 9.6
2087 Female, age 72, unknown 9.0
1913 Female, age 42, unknown 8.8
Ventral tegmental area
nTPM: 11.0
1915 Female, age 42, unknown 11.9
2021 Male, age 53, unknown 11.7
2223 Female, age 72, unknown 11.6
2218 Male, age 76, both hemispheres 11.5
1942 Male, age 51, unknown 11.4
2585 Male, age 75, both hemispheres 10.8
2410 Female, age 72, unknown 10.7
2589 Male, age 74, both hemispheres 10.5
1918 Male, age 72, unknown 10.3
2592 Female, age 75, unknown 9.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.2
Samples: 139

Max nTPM: 43.3
Min nTPM: 6.0
Std nTPM: 5.3
Median nTPM: 15.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 43.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 31.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 30.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 29.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 27.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 26.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 25.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.7
FF:10158-103A5 76 years, female 17.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.1
Sample A Female 2.8
Sample B Female 3.5
Sample C Male 2.3
Sample D Male 2.1
Periaqueductal gray
nTPM: 1.9
Samples: 3

Max nTPM: 2.4
Min nTPM: 1.5
Sample B Female 2.4
Sample C Male 1.7
Sample D Male 1.5
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Female 3.0
Sample B Female 2.0
Sample C Male 2.6
Sample D Male 3.1
Superior colliculi
nTPM: 3.5
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.4
Sample A Female 3.6
Sample B Female 2.8
Sample C Male 5.2
Sample D Male 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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