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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23.0 nTPM
HPA:23.0 nTPM
GTEx:19.2 nTPM
FANTOM5:85.1 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:47.4 nTPM
Allen mouse:3.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 23.0
Sample id Sample description nTPM
Amygdala
nTPM: 16.1
1987 Female, age 91, left hemisphere 20.5
2695 Female, age 67, right hemisphere 18.6
2514 Male, age 75, right hemisphere 16.0
2517 Female, age 94, left hemisphere 12.7
2814 Male, age 76, right hemisphere 12.6
Basal amygdala
nTPM: 22.5
2243 Female, age 91, right hemisphere 36.8
2609 Male, age 75, right hemisphere 30.8
2110 Male, age 80, left hemisphere 21.0
2685 Female, age 94, left hemisphere 20.3
2827 Female, age 67, right hemisphere 15.1
1955 Male, age 76, both hemispheres 10.9
Central amygdala
nTPM: 16.9
2515 Male, age 75, right hemisphere 19.2
2239 Male, age 80, left hemisphere 18.1
1905 Male, age 76, both hemispheres 16.4
2826 Female, age 94, left hemisphere 15.8
2701 Female, age 91, right hemisphere 14.9
Corticomedial amygdala
nTPM: 23.0
2242 Female, age 91, right hemisphere 37.8
2829 Male, age 80, left hemisphere 28.9
2428 Male, age 75, right hemisphere 23.9
2429 Female, age 94, left hemisphere 23.4
2535 Female, age 67, right hemisphere 15.1
2240 Male, age 76, both hemispheres 8.8
Lateral amygdala
nTPM: 18.8
2516 Male, age 75, right hemisphere 28.6
2255 Female, age 91, right hemisphere 20.2
2830 Female, age 67, right hemisphere 19.5
1883 Male, age 76, both hemispheres 18.2
2534 Female, age 94, left hemisphere 15.7
2256 Male, age 80, left hemisphere 10.3
Stria terminalis, bed nucleus
nTPM: 19.2
2201 Male, age 74, unknown 21.0
2486 Female, age 94, both hemispheres 18.7
1974 Female, age 91, both hemispheres 17.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 19.2
Samples: 152

Max nTPM: 34.8
Min nTPM: 7.4
Std nTPM: 5.4
Median nTPM: 19.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 34.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 29.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 28.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 28.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 28.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 28.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 27.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 27.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 26.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 26.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 26.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 26.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 26.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 26.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 26.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 26.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 25.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 25.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 25.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 25.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 25.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 25.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 25.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 25.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 25.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 24.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 24.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 24.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 24.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 24.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 24.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 24.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 24.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 24.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 24.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 24.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 23.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 23.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 23.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 23.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 23.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 23.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 23.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 23.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 23.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 23.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 22.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 22.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 22.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 22.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 22.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 22.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 21.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 21.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 21.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 21.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 21.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 21.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 21.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 20.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 20.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 20.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 20.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 20.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 20.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 20.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 20.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 20.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 20.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 19.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 19.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 19.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 19.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 19.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 19.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 19.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 19.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 19.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 19.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 19.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 18.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 18.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 18.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 18.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 18.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 18.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 17.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 17.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 17.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 17.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 17.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 17.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 17.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 17.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 17.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 17.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 16.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 16.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 16.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 16.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 16.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 16.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 16.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 16.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 15.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 15.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 15.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 15.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 15.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 15.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 14.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 14.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 14.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 14.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 13.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 13.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 13.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 13.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 13.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 13.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 13.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 13.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 12.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 12.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 12.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 12.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 12.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 12.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 12.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 12.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 11.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 11.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 11.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 11.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 11.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 11.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 10.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 10.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 10.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 9.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 9.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 8.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 8.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 85.1
FF:10151-102I7 76 years, female 85.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.7
Pig sample Sample description nTPM
Amygdala
nTPM: 26.7
Samples: 4

Max nTPM: 42.8
Min nTPM: 11.0
Sample A Female 42.8
Sample B Female 11.0
Sample C Male 27.6
Sample D Male 25.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 47.4
Samples: 4

Max nTPM: 48.6
Min nTPM: 46.2
Sample A Male 48.6
Sample B Male 47.0
Sample C Female 47.9
Sample D Female 46.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.9
74958645 Antisense, RP_060315_05_B11, Mouse strain C57BL/6J (56 days, male) 4.7
70230861 Antisense, RP_050524_04_F10, Mouse strain C57BL/6J (56 days, male) 3.2

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