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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:9.8 nTPM
HPA:9.8 nTPM
GTEx:13.5 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:16.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 9.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 7.4
2194 Female, age 79, both hemispheres 9.5
2565 Male, age 75, midline 9.2
1981 Female, age 72, midline 7.5
2816 Male, age 47, midline 7.4
2048 Male, age 55, midline 3.2
Cervical spinal cord, dorsal horn
nTPM: 7.6
2297 Male, age 75, both hemispheres 12.1
2173 Female, age 72, unknown 8.5
1877 Male, age 55, unknown 8.3
2296 Male, age 66, both hemispheres 7.0
2069 Male, age 47, both hemispheres 5.8
2721 Male, age 90, both hemispheres 3.9
Cervical spinal cord, ventral horn
nTPM: 9.8
2480 Male, age 75, both hemispheres 14.6
2068 Male, age 55, unknown 14.5
2820 Female, age 79, both hemispheres 13.2
2809 Male, age 90, both hemispheres 8.7
2295 Male, age 66, both hemispheres 6.7
2098 Female, age 72, unknown 1.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 13.5
Samples: 159

Max nTPM: 26.1
Min nTPM: 6.7
Std nTPM: 3.2
Median nTPM: 13.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 26.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 23.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 21.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 21.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 20.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 20.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 20.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 19.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 19.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 19.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 18.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 18.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 18.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 17.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 17.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 17.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 17.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 17.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 16.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 16.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 16.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 16.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 16.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 16.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 16.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 16.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 16.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 16.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 15.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 15.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 15.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 15.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 15.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 15.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 15.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 15.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 15.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 15.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 15.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 15.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 15.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 15.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 15.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 15.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 15.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 15.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 15.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 14.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 14.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 14.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 14.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 14.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 14.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 14.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 14.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 14.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 14.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 14.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 14.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 14.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 14.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 14.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 14.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 14.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 14.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 14.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 14.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 13.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 13.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 13.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 13.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 13.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 13.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 13.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 13.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 13.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 13.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 13.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 13.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 13.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 13.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 13.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 13.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 13.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 13.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 12.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 12.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 12.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 12.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 12.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 12.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 12.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 12.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 12.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 12.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 12.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 12.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 12.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 12.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 12.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 12.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 12.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 12.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 12.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 12.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 12.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 11.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 11.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 11.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 11.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 11.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 11.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 11.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 11.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 11.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 11.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 11.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 11.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 11.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 11.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 11.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 11.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 11.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 10.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 10.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 10.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 10.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 10.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 10.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 10.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 10.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 10.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 10.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 10.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 10.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 10.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 10.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 10.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 9.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 9.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 9.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 9.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 9.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 9.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 9.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 8.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 8.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 8.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 8.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 8.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 8.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 7.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 7.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 7.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 6.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.0
FF:10181-103D1 60 years, female 52.4
FF:10159-103A6 76 years, female 29.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 16.0
Samples: 4

Max nTPM: 24.9
Min nTPM: 9.7
Sample A Female 24.9
Sample B Female 9.7
Sample C Male 11.3
Sample D Male 18.2
Ventral spinal cord
nTPM: 10.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 7.2
Sample A Female 15.5
Sample B Female 7.2
Sample C Male 11.7
Sample D Male 9.0

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