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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:22.7 nTPM
HPA:22.7 nTPM
GTEx:49.9 nTPM
FANTOM5:152.8 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:64.9 nTPM
Allen mouse:8.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 22.7
Sample id Sample description nTPM
Amygdala
nTPM: 21.2
1987 Female, age 91, left hemisphere 21.9
2517 Female, age 94, left hemisphere 21.7
2695 Female, age 67, right hemisphere 21.1
2514 Male, age 75, right hemisphere 20.9
2814 Male, age 76, right hemisphere 20.3
Basal amygdala
nTPM: 22.0
2110 Male, age 80, left hemisphere 22.8
2685 Female, age 94, left hemisphere 22.8
2243 Female, age 91, right hemisphere 22.1
2827 Female, age 67, right hemisphere 21.7
2609 Male, age 75, right hemisphere 21.6
1955 Male, age 76, both hemispheres 21.0
Central amygdala
nTPM: 21.8
2701 Female, age 91, right hemisphere 22.6
2515 Male, age 75, right hemisphere 22.4
2239 Male, age 80, left hemisphere 21.6
2826 Female, age 94, left hemisphere 21.4
1905 Male, age 76, both hemispheres 20.7
Corticomedial amygdala
nTPM: 22.7
2535 Female, age 67, right hemisphere 24.6
2429 Female, age 94, left hemisphere 23.5
2242 Female, age 91, right hemisphere 22.7
2428 Male, age 75, right hemisphere 22.2
2240 Male, age 76, both hemispheres 21.7
2829 Male, age 80, left hemisphere 21.7
Lateral amygdala
nTPM: 22.3
2255 Female, age 91, right hemisphere 24.4
2516 Male, age 75, right hemisphere 23.1
2256 Male, age 80, left hemisphere 22.8
2830 Female, age 67, right hemisphere 22.2
2534 Female, age 94, left hemisphere 20.9
1883 Male, age 76, both hemispheres 20.5
Stria terminalis, bed nucleus
nTPM: 22.1
2486 Female, age 94, both hemispheres 22.2
2201 Male, age 74, unknown 22.1
1974 Female, age 91, both hemispheres 22.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 49.9
Samples: 152

Max nTPM: 147.9
Min nTPM: 15.6
Std nTPM: 20.6
Median nTPM: 46.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 147.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 115.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 93.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 89.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 87.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 86.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 86.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 84.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 83.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 82.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 80.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 79.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 76.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 74.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 71.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 68.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 68.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 65.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 65.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 65.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 65.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 63.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 63.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 61.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 61.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 60.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 60.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 60.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 59.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 59.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 58.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 58.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 57.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 57.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 57.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 56.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 56.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 56.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 55.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 55.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 53.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 53.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 53.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 53.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 53.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 53.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 53.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 52.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 52.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 52.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 51.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 50.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 50.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 49.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 49.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 49.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 46.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 46.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 46.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 46.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 45.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 45.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 44.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 44.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 44.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 43.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 42.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 42.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 41.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 41.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 41.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 41.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 41.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 41.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 41.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 40.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 39.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 38.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 38.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 38.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 38.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 37.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 37.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 37.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 37.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 37.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 36.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 36.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 35.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 35.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 34.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 34.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 34.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 34.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 34.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 33.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 31.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 30.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 30.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 30.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 30.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 30.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 29.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 28.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 28.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 28.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 28.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 27.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 27.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 27.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 26.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 25.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 25.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 25.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 24.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 24.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 24.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 22.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 21.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 20.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 19.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 18.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 16.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 15.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 15.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 152.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 152.8
FF:10151-102I7 76 years, female 152.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.6
Pig sample Sample description nTPM
Amygdala
nTPM: 35.6
Samples: 4

Max nTPM: 48.1
Min nTPM: 30.7
Sample A Female 48.1
Sample B Female 31.9
Sample C Male 31.5
Sample D Male 30.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 64.9
Samples: 4

Max nTPM: 68.2
Min nTPM: 60.9
Sample A Male 68.2
Sample B Male 66.7
Sample C Female 60.9
Sample D Female 63.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.5
69174022 Antisense, RP_050329_01_G08, Mouse strain C57BL/6J (56 days, male) 8.5

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