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EIF3L
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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23.4 nTPM
HPA:23.4 nTPM
GTEx:39.0 nTPM
FANTOM5:165.9 Scaled Tags Per Million
Pig:44.9 nTPM
Mouse:71.8 nTPM
Allen mouse:9.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA003028
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Hippocampus
nTPM: 22.5
2148 Female, age 91, left hemisphere 24.9
2529 Female, age 94, left hemisphere 22.8
1855 Male, age 76, left hemisphere 22.1
1911 Female, age 85, right hemisphere 22.0
2621 Female, age 67, right hemisphere 21.7
1898 Male, age 80, left hemisphere 21.5
Dentate gyrus
nTPM: 23.4
2531 Female, age 67, both hemispheres 25.3
2528 Male, age 74, both hemispheres 24.3
2010 Male, age 76, both hemispheres 23.7
1927 Female, age 91, both hemispheres 23.5
2246 Female, age 85, both hemispheres 22.1
2530 Female, age 94, left hemisphere 21.3
Entorhinal gyrus
nTPM: 22.2
2613 Female, age 94, left hemisphere 23.3
2764 Male, age 80, right hemisphere 22.6
1938 Female, age 85, left hemisphere 22.5
2686 Male, age 75, right hemisphere 22.0
2117 Female, age 91, right hemisphere 21.7
1787 Male, age 76, left hemisphere 21.1
Hippocampus, CA1
nTPM: 23.1
2045 Male, age 76, both hemispheres 25.2
1873 Female, age 85, both hemispheres 23.4
2082 Female, age 91, right hemisphere 22.9
2527 Male, age 74, both hemispheres 22.7
2749 Male, age 80, left hemisphere 21.3
Hippocampus, CA2
nTPM: 22.5
2113 Female, age 91, right hemisphere 23.2
1963 Male, age 80, left hemisphere 23.1
1940 Female, age 85, left hemisphere 22.8
1892 Male, age 76, both hemispheres 22.5
2249 Male, age 74, both hemispheres 22.0
2437 Female, age 94, left hemisphere 21.0
Hippocampus, CA3
nTPM: 22.8
2620 Female, age 94, left hemisphere 24.0
2861 Female, age 67, both hemispheres 23.0
2137 Male, age 80, left hemisphere 22.8
2436 Male, age 74, both hemispheres 22.7
1891 Female, age 85, both hemispheres 22.5
1867 Male, age 76, both hemispheres 21.6
Parahippocampal cortex
nTPM: 23.0
1933 Female, age 85, both hemispheres 23.8
2018 Male, age 76, both hemispheres 23.6
2693 Female, age 94, both hemispheres 23.5
2245 Female, age 91, both hemispheres 23.3
2250 Female, age 67, right hemisphere 23.2
2692 Male, age 74, both hemispheres 23.2
2622 Female, age 67, right hemisphere 22.9
1990 Female, age 91, right hemisphere 22.4
1850 Male, age 80, both hemispheres 22.0
2532 Female, age 72, left hemisphere 21.8
Perirhinal gyrus
nTPM: 22.2
1847 Female, age 91, left hemisphere 22.8
1841 Female, age 85, right hemisphere 22.6
2521 Female, age 94, right hemisphere 21.9
2848 Male, age 76, right hemisphere 21.8
1794 Male, age 80, right hemisphere 21.7
Subiculum
nTPM: 22.3
2042 Male, age 76, both hemispheres 23.6
2729 Female, age 91, right hemisphere 23.4
2619 Male, age 74, both hemispheres 22.6
1901 Male, age 80, both hemispheres 21.6
2438 Female, age 94, left hemisphere 21.6
1977 Female, age 85, both hemispheres 21.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.0
Samples: 197

Max nTPM: 114.4
Min nTPM: 12.2
Std nTPM: 16.8
Median nTPM: 36.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 114.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 90.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 88.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 85.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 80.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 75.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 75.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 70.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 69.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 68.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 68.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 68.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 66.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 63.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 63.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 62.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 61.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 61.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 61.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 59.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 59.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 59.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 59.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 58.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 58.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 58.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 58.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 57.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 57.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 57.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 57.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 53.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 53.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 53.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 53.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 53.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 52.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 52.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 52.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 51.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 51.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 50.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 50.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 50.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 50.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 49.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 49.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 49.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 49.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 49.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 48.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 48.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 48.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 48.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 48.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 47.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 46.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 46.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 46.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 46.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 46.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 45.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 45.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 45.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 45.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 45.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 45.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 45.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 45.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 44.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 44.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 44.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 43.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 43.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 43.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 42.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 42.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 41.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 40.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 40.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 40.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 40.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 40.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 40.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 40.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 39.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 39.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 39.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 39.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 39.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 38.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 37.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 37.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 37.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 37.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 36.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 36.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 36.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 36.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 36.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 35.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 35.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 35.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 35.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 34.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 34.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 34.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 34.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 34.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 33.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 33.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 33.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 33.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 32.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 32.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 32.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 32.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 32.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 32.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 32.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 32.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 31.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 31.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 31.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 31.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 30.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 29.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 29.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 29.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 29.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 28.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 28.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 28.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 27.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 27.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 27.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 27.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 27.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 27.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 27.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 26.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 26.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 26.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 26.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 26.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 26.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 25.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 25.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 25.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 25.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 25.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 25.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 24.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 24.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 24.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 24.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 23.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 23.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 23.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 22.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 22.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 22.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 22.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 22.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 22.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 22.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 21.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 21.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 21.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 21.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 21.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 21.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 20.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 20.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 20.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 20.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 19.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 19.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 19.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 19.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 18.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 18.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 18.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 18.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 17.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 17.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 17.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 17.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 16.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 16.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 15.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 14.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 14.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 13.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 12.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 12.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 165.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 165.9
FF:10169-103B7 60 years, female 196.7
FF:10153-102I9 76 years, female 135.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 44.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 44.9
Samples: 4

Max nTPM: 55.5
Min nTPM: 35.4
Sample A Female 55.5
Sample B Female 43.9
Sample C Male 44.7
Sample D Male 35.4
Entorhinal cortex
nTPM: 37.3
Samples: 4

Max nTPM: 43.3
Min nTPM: 28.4
Sample A Female 43.3
Sample B Female 37.7
Sample C Male 39.7
Sample D Male 28.4
Subiculum
nTPM: 38.9
Samples: 4

Max nTPM: 51.3
Min nTPM: 32.0
Sample A Female 51.3
Sample B Female 37.0
Sample C Male 35.2
Sample D Male 32.0
Ventral hippocampus
nTPM: 41.9
Samples: 4

Max nTPM: 50.5
Min nTPM: 33.1
Sample A Female 42.5
Sample B Female 33.1
Sample C Male 50.5
Sample D Male 41.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 64.9
Samples: 4

Max nTPM: 71.0
Min nTPM: 60.3
Sample A Male 60.6
Sample B Male 60.3
Sample C Female 67.6
Sample D Female 71.0
Hippocampal formation
nTPM: 71.8
Samples: 4

Max nTPM: 75.2
Min nTPM: 68.5
Sample A Male 75.2
Sample B Male 68.5
Sample C Female 74.1
Sample D Female 69.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.0
69174022 Antisense, RP_050329_01_G08, Mouse strain C57BL/6J (56 days, male) 9.0

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