We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GNAS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GNAS
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1841.6 nTPM
HPA Brain:961.3 nTPM
GTEx:1841.6 nTPM
FANTOM5:1293.2 Scaled Tags Per Million
Pig:1190.4 nTPM
Mouse:1801.1 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

961.3
Sample id Sample description nTPM
Amygdala
nTPM: 938.7
1987 Female, age 91, left hemisphere 1151.3
2814 Male, age 76, right hemisphere 1073.0
2514 Male, age 75, right hemisphere 915.9
2517 Female, age 94, left hemisphere 787.0
2695 Female, age 67, right hemisphere 766.5
Basal amygdala
nTPM: 921.9
2243 Female, age 91, right hemisphere 1161.2
2609 Male, age 75, right hemisphere 1040.5
2110 Male, age 80, left hemisphere 914.2
2685 Female, age 94, left hemisphere 886.8
1955 Male, age 76, both hemispheres 884.1
2827 Female, age 67, right hemisphere 644.9
Central amygdala
nTPM: 943.1
2826 Female, age 94, left hemisphere 1029.6
2701 Female, age 91, right hemisphere 1003.1
2515 Male, age 75, right hemisphere 945.2
1905 Male, age 76, both hemispheres 930.1
2239 Male, age 80, left hemisphere 807.4
Corticomedial amygdala
nTPM: 961.3
2242 Female, age 91, right hemisphere 1232.2
2428 Male, age 75, right hemisphere 1025.1
2829 Male, age 80, left hemisphere 1015.2
2240 Male, age 76, both hemispheres 915.1
2429 Female, age 94, left hemisphere 836.2
2535 Female, age 67, right hemisphere 743.9
Lateral amygdala
nTPM: 826.5
2534 Female, age 94, left hemisphere 1075.7
1883 Male, age 76, both hemispheres 1022.0
2516 Male, age 75, right hemisphere 905.6
2255 Female, age 91, right hemisphere 771.9
2256 Male, age 80, left hemisphere 609.4
2830 Female, age 67, right hemisphere 574.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1841.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1841.6
Samples: 181

Max nTPM: 3285.3
Min nTPM: 772.3
Std nTPM: 459.7
Median nTPM: 1844.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 3285.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3217.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3073.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3043.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2912.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2889.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2783.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2774.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2623.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2518.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 2462.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 2447.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2429.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2415.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2406.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2393.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 2375.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2358.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2352.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 2347.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 2333.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 2322.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2321.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2318.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2308.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2308.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2307.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2289.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2286.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2283.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 2258.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2250.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2249.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2206.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2199.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2198.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2194.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2192.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2182.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2180.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2177.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2175.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2167.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2157.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2157.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 2145.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2142.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2138.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2135.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2105.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2101.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2090.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2085.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2080.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2078.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2068.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2056.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2052.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2049.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2040.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2035.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2016.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 2015.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 2013.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1983.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1982.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1978.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1975.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1974.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1970.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1968.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1955.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1952.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1952.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1946.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1941.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1929.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1915.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1910.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1898.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1887.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1886.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1886.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1879.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1878.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1874.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1866.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1866.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1863.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1850.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1844.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1838.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1810.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1798.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1794.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1792.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1790.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1784.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1782.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1781.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1774.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1773.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1765.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1762.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1747.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1742.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1738.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1718.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1716.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1712.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1706.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1695.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1679.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1670.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1657.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1651.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1646.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1627.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1626.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1623.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1619.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1617.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1615.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1606.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1600.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1600.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1596.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1589.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1589.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1582.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1578.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1568.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1564.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1559.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1545.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1537.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1533.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1530.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1526.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1523.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1509.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1506.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1493.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1490.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1490.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1467.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1438.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1432.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1416.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1405.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1404.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1386.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1384.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1380.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1380.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1371.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1362.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1330.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1321.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1283.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1273.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1219.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1214.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1204.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1192.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1183.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1177.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1174.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1170.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1142.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1121.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1113.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1096.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1087.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1058.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1015.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 978.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 970.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 929.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 871.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 772.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1293.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1293.2
FF:10151-102I7 76 years, female 1293.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1190.4
Pig sample Sample description nTPM
Amygdala
nTPM: 1190.5
Samples: 4

Max nTPM: 1688.0
Min nTPM: 909.2
Sample A Female 1688.0
Sample B Female 937.2
Sample C Male 909.2
Sample D Male 1227.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1801.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1801.1
Samples: 4

Max nTPM: 1869.0
Min nTPM: 1712.1
Sample A Male 1869.0
Sample B Male 1712.1
Sample C Female 1821.8
Sample D Female 1801.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.7
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 17.4
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 13.7
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo