HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:1526.4 nTPM
HPA Brain:1177.4 nTPM
GTEx:1526.4 nTPM
FANTOM5:1065.9 Scaled Tags Per Million
Pig:1444.9 nTPM
Mouse:1742.3 nTPM
Allen mouse:7.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Glial cells Not detectedNot detectedLowLow
Neuronal cells Not detectedNot detectedLowLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 1177.4
Sample id Sample description nTPM
Hippocampus
nTPM: 839.5
1898 Male, age 80, left hemisphere 1015.1
2621 Female, age 67, right hemisphere 960.5
2529 Female, age 94, left hemisphere 863.0
2148 Female, age 91, left hemisphere 777.9
1855 Male, age 76, left hemisphere 754.9
1911 Female, age 85, right hemisphere 665.8
Dentate gyrus
nTPM: 890.8
2530 Female, age 94, left hemisphere 1055.0
1927 Female, age 91, both hemispheres 969.4
2528 Male, age 74, both hemispheres 875.9
2010 Male, age 76, both hemispheres 832.4
2531 Female, age 67, both hemispheres 828.6
2246 Female, age 85, both hemispheres 783.5
Entorhinal gyrus
nTPM: 861.0
2764 Male, age 80, right hemisphere 1011.6
1787 Male, age 76, left hemisphere 956.6
2613 Female, age 94, left hemisphere 878.1
1938 Female, age 85, left hemisphere 826.7
2686 Male, age 75, right hemisphere 806.9
2117 Female, age 91, right hemisphere 686.0
Hippocampus, CA1
nTPM: 890.9
2749 Male, age 80, left hemisphere 1146.5
2527 Male, age 74, both hemispheres 938.3
1873 Female, age 85, both hemispheres 845.3
2082 Female, age 91, right hemisphere 834.2
2045 Male, age 76, both hemispheres 690.4
Hippocampus, CA2
nTPM: 896.3
1963 Male, age 80, left hemisphere 1070.4
1892 Male, age 76, both hemispheres 982.9
2437 Female, age 94, left hemisphere 977.4
2249 Male, age 74, both hemispheres 874.2
2113 Female, age 91, right hemisphere 748.8
1940 Female, age 85, left hemisphere 724.2
Hippocampus, CA3
nTPM: 848.2
2436 Male, age 74, both hemispheres 1003.6
2137 Male, age 80, left hemisphere 929.9
2861 Female, age 67, both hemispheres 890.8
1867 Male, age 76, both hemispheres 846.9
2620 Female, age 94, left hemisphere 796.1
1891 Female, age 85, both hemispheres 622.2
Parahippocampal cortex
nTPM: 914.1
2245 Female, age 91, both hemispheres 1114.9
2250 Female, age 67, right hemisphere 1075.2
1990 Female, age 91, right hemisphere 1062.4
1850 Male, age 80, both hemispheres 1032.5
2532 Female, age 72, left hemisphere 904.9
2693 Female, age 94, both hemispheres 859.3
1933 Female, age 85, both hemispheres 813.5
2018 Male, age 76, both hemispheres 799.1
2622 Female, age 67, right hemisphere 760.1
2692 Male, age 74, both hemispheres 718.7
Perirhinal gyrus
nTPM: 1177.4
1847 Female, age 91, left hemisphere 1407.7
1794 Male, age 80, right hemisphere 1254.6
2521 Female, age 94, right hemisphere 1178.4
1841 Female, age 85, right hemisphere 1108.2
2848 Male, age 76, right hemisphere 938.0
Subiculum
nTPM: 756.5
1977 Female, age 85, both hemispheres 918.6
2619 Male, age 74, both hemispheres 870.0
2438 Female, age 94, left hemisphere 846.3
1901 Male, age 80, both hemispheres 697.7
2729 Female, age 91, right hemisphere 621.4
2042 Male, age 76, both hemispheres 585.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 1526.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1526.4
Samples: 255

Max nTPM: 3003.0
Min nTPM: 535.7
Std nTPM: 479.5
Median nTPM: 1490.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3003.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 2803.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2728.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 2627.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2615.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2603.9
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 2591.9
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 2575.0
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 2527.1
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 2441.2
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 2425.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1065.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1065.9
FF:10153-102I9 76 years, female 1082.8
FF:10169-103B7 60 years, female 1048.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1444.9
Pig sample Sample description nTPM
Subiculum
nTPM: 1211.6
Samples: 4

Max nTPM: 1514.5
Min nTPM: 952.9
Sample A Female 1514.5
Sample B Female 1161.3
Sample C Male 1217.8
Sample D Male 952.9
Dorsal hippocampus
nTPM: 1209.2
Samples: 4

Max nTPM: 1419.7
Min nTPM: 846.8
Sample A Female 1415.7
Sample B Female 1154.7
Sample C Male 1419.7
Sample D Male 846.8
Entorhinal cortex
nTPM: 991.6
Samples: 4

Max nTPM: 1063.7
Min nTPM: 859.4
Sample A Female 1001.1
Sample B Female 1042.2
Sample C Male 1063.7
Sample D Male 859.4
Ventral hippocampus
nTPM: 1444.9
Samples: 4

Max nTPM: 1916.4
Min nTPM: 1008.9
Sample A Female 1661.3
Sample B Female 1008.9
Sample C Male 1916.4
Sample D Male 1192.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1742.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1622.4
Samples: 4

Max nTPM: 1702.0
Min nTPM: 1569.3
Sample A Male 1569.3
Sample B Male 1574.6
Sample C Female 1702.0
Sample D Female 1643.6
Hippocampal formation
nTPM: 1742.3
Samples: 4

Max nTPM: 1778.9
Min nTPM: 1685.2
Sample A Male 1778.9
Sample B Male 1685.2
Sample C Female 1767.2
Sample D Female 1737.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 14.5
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 12.4
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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