MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1381.5 nTPM
HPA Brain:1941.4 nTPM
GTEx:1381.5 nTPM
FANTOM5:557.8 Scaled Tags Per Million
Pig:1549.8 nTPM
Mouse:2313.8 nTPM
Allen mouse:5.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1941.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 986.8
2411 Female, age 72, unknown 1224.0
1870 Female, age 42, unknown 1143.9
1827 Male, age 72, unknown 1137.0
2219 Male, age 76, both hemispheres 1091.9
1833 Male, age 53, unknown 1009.0
2586 Male, age 75, left hemisphere 965.4
2666 Male, age 74, left hemisphere 916.2
1830 Male, age 51, unknown 870.1
2019 Male, age 18, unknown 786.2
2828 Female, age 72, unknown 724.4
Dorsal raphe nucleus
nTPM: 1410.6
2047 Male, age 72, unknown 1891.5
2298 Female, age 72, unknown 1805.2
2750 Male, age 76, both hemispheres 1298.5
1828 Male, age 53, unknown 1133.4
2016 Female, age 72, unknown 924.1
Inferior colliculus
nTPM: 1269.9
1848 Female, age 42, unknown 1448.8
2097 Female, age 72, unknown 1282.0
2849 Male, age 72, unknown 1276.9
1890 Male, age 53, unknown 1072.0
Median raphe nucleus
nTPM: 1941.4
2220 Male, age 76, midline 1941.4
Periaquaductal grey, anterior
nTPM: 1046.2
1795 Male, age 51, unknown 1118.6
2502 Female, age 75, unknown 1014.9
1947 Male, age 18, unknown 1005.1
Periaquaductal grey, dorsal
nTPM: 1090.2
1840 Male, age 53, unknown 1408.8
2850 Male, age 76, both hemispheres 1147.1
2464 Female, age 72, unknown 985.3
1831 Male, age 72, unknown 819.8
Periaquaductal grey, lateral
nTPM: 959.1
2053 Male, age 18, unknown 976.4
2272 Male, age 74, both hemispheres 972.7
2140 Male, age 76, both hemispheres 928.2
Pretectal area
nTPM: 996.7
2224 Female, age 72, unknown 1340.5
1944 Female, age 72, unknown 1183.6
2007 Male, age 72, unknown 1127.5
2825 Male, age 18, unknown 1075.2
1817 Female, age 42, unknown 993.5
1816 Male, age 51, unknown 982.8
2667 Female, age 75, unknown 945.2
2316 Male, age 76, right hemisphere 907.5
2273 Male, age 74, both hemispheres 896.2
1815 Male, age 53, unknown 824.4
2407 Male, age 75, both hemispheres 687.5
Red nucleus
nTPM: 769.2
1821 Female, age 72, unknown 969.7
2785 Male, age 18, unknown 835.6
2769 Male, age 72, unknown 809.6
2227 Male, age 72, unknown 799.8
1954 Female, age 42, unknown 785.1
2503 Female, age 72, unknown 779.6
2725 Female, age 75, unknown 772.8
2584 Male, age 75, left hemisphere 750.1
2588 Male, age 74, left hemisphere 745.5
1904 Male, age 53, unknown 695.6
1865 Male, age 51, unknown 687.1
2823 Male, age 76, right hemisphere 600.4
Substantia nigra
nTPM: 1020.9
1916 Female, age 42, unknown 1205.0
1889 Female, age 72, unknown 1204.3
1941 Male, age 53, unknown 1186.1
2665 Male, age 74, both hemispheres 1076.0
2241 Male, age 72, unknown 1017.7
1851 Male, age 51, unknown 1017.5
2699 Male, age 18, unknown 1008.4
2590 Female, age 75, unknown 911.0
2409 Female, age 72, unknown 796.5
2583 Male, age 75, right hemisphere 786.4
Superior colliculus
nTPM: 911.8
1895 Male, age 76, right hemisphere 1154.3
1839 Male, age 51, unknown 1098.7
1796 Male, age 53, unknown 1076.0
2668 Female, age 75, unknown 1040.6
2261 Male, age 18, unknown 939.2
2087 Female, age 72, unknown 932.4
2587 Male, age 74, left hemisphere 903.9
2664 Male, age 75, both hemispheres 842.0
1913 Female, age 42, unknown 581.4
1995 Male, age 72, unknown 549.2
Ventral tegmental area
nTPM: 1081.2
2410 Female, age 72, unknown 1227.8
1915 Female, age 42, unknown 1202.4
2218 Male, age 76, both hemispheres 1089.8
2021 Male, age 53, unknown 1023.6
1942 Male, age 51, unknown 1002.6
2223 Female, age 72, unknown 941.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1381.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1381.5
Samples: 183

Max nTPM: 4055.7
Min nTPM: 608.7
Std nTPM: 507.0
Median nTPM: 1248.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4055.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 3199.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2764.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2734.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 2674.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 2590.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2510.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 2502.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 2378.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 2319.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 2238.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 557.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 557.8
FF:10158-103A5 76 years, female 557.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1549.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1456.9
Samples: 4

Max nTPM: 1828.5
Min nTPM: 1106.8
Sample A Female 1688.6
Sample B Female 1203.7
Sample C Male 1828.5
Sample D Male 1106.8
Midbrain
nTPM: 1532.5
Samples: 4

Max nTPM: 1770.7
Min nTPM: 1341.7
Sample A Female 1455.0
Sample B Female 1341.7
Sample C Male 1562.4
Sample D Male 1770.7
Periaqueductal gray
nTPM: 1549.8
Samples: 3

Max nTPM: 2071.4
Min nTPM: 1250.5
Sample B Female 1327.5
Sample C Male 2071.4
Sample D Male 1250.5
Superior colliculi
nTPM: 1514.4
Samples: 4

Max nTPM: 1804.2
Min nTPM: 1182.6
Sample A Female 1635.7
Sample B Female 1182.6
Sample C Male 1804.2
Sample D Male 1434.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2313.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 2313.8
Samples: 4

Max nTPM: 2364.6
Min nTPM: 2255.0
Sample A Male 2255.0
Sample B Male 2364.6
Sample C Female 2281.6
Sample D Female 2353.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 17.3
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 12.7
511 Sense, RPS_Baylor_36998, Mouse strain C57BL/6J (56 days, male) 0.0
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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