On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1381.5
nTPM
HPA Brain:
1941.3
nTPM
GTEx:
1381.5
nTPM
FANTOM5:
557.8
Scaled Tags Per Million
Macaque:
1603.6
nTPM
Mouse:
1611.7
nTPM
Rat:
1461.6
nTPM
Pig:
1581.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1941.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 989.8
2411
Female, age 72, unknown
1228.1
1870
Female, age 42, unknown
1147.1
1827
Male, age 72, unknown
1140.4
2219
Male, age 76, both hemispheres
1092.0
1833
Male, age 53, unknown
1012.1
2586
Male, age 75, left hemisphere
970.7
2666
Male, age 74, left hemisphere
919.3
1830
Male, age 51, unknown
872.7
2019
Male, age 18, unknown
788.4
2828
Female, age 72, unknown
726.7
Dorsal raphe nucleus nTPM: 1414.4
2047
Male, age 72, unknown
1896.7
2298
Female, age 72, unknown
1812.1
2750
Male, age 76, both hemispheres
1298.6
1828
Male, age 53, unknown
1137.0
2016
Female, age 72, unknown
927.5
Inferior colliculus nTPM: 1274.1
1848
Female, age 42, unknown
1453.4
2097
Female, age 72, unknown
1286.7
2849
Male, age 72, unknown
1281.1
1890
Male, age 53, unknown
1075.3
Median raphe nucleus nTPM: 1941.3
2220
Male, age 76, midline
1941.3
Periaquaductal grey, anterior nTPM: 1049.5
1795
Male, age 51, unknown
1122.4
2502
Female, age 75, unknown
1018.2
1947
Male, age 18, unknown
1007.9
Periaquaductal grey, dorsal nTPM: 1092.9
1840
Male, age 53, unknown
1412.7
2850
Male, age 76, both hemispheres
1147.7
2464
Female, age 72, unknown
988.7
1831
Male, age 72, unknown
822.5
Periaquaductal grey, lateral nTPM: 961.4
2053
Male, age 18, unknown
979.4
2272
Male, age 74, both hemispheres
976.2
2140
Male, age 76, both hemispheres
928.7
Pretectal area nTPM: 999.8
2224
Female, age 72, unknown
1345.7
1944
Female, age 72, unknown
1186.9
2007
Male, age 72, unknown
1131.2
2825
Male, age 18, unknown
1078.5
1817
Female, age 42, unknown
996.6
1816
Male, age 51, unknown
985.3
2667
Female, age 75, unknown
948.0
2316
Male, age 76, right hemisphere
907.7
2273
Male, age 74, both hemispheres
899.5
1815
Male, age 53, unknown
826.4
2407
Male, age 75, both hemispheres
691.6
Red nucleus nTPM: 771.7
1821
Female, age 72, unknown
972.6
2785
Male, age 18, unknown
838.4
2769
Male, age 72, unknown
812.2
2227
Male, age 72, unknown
802.1
1954
Female, age 42, unknown
787.6
2503
Female, age 72, unknown
782.0
2725
Female, age 75, unknown
775.5
2584
Male, age 75, left hemisphere
754.3
2588
Male, age 74, left hemisphere
747.5
1904
Male, age 53, unknown
698.2
1865
Male, age 51, unknown
689.3
2823
Male, age 76, right hemisphere
600.6
Substantia nigra nTPM: 1024.3
1916
Female, age 42, unknown
1209.7
1889
Female, age 72, unknown
1208.3
1941
Male, age 53, unknown
1189.3
2665
Male, age 74, both hemispheres
1079.9
1851
Male, age 51, unknown
1020.7
2241
Male, age 72, unknown
1020.3
2699
Male, age 18, unknown
1011.7
2590
Female, age 75, unknown
913.6
2409
Female, age 72, unknown
799.0
2583
Male, age 75, right hemisphere
790.4
Superior colliculus nTPM: 914.6
1895
Male, age 76, right hemisphere
1154.2
1839
Male, age 51, unknown
1102.2
1796
Male, age 53, unknown
1079.3
2668
Female, age 75, unknown
1044.2
2261
Male, age 18, unknown
942.0
2087
Female, age 72, unknown
935.2
2587
Male, age 74, left hemisphere
907.0
2664
Male, age 75, both hemispheres
847.1
1913
Female, age 42, unknown
583.6
1995
Male, age 72, unknown
550.9
Ventral tegmental area nTPM: 1084.2
2410
Female, age 72, unknown
1232.5
1915
Female, age 42, unknown
1206.3
2218
Male, age 76, both hemispheres
1089.7
2021
Male, age 53, unknown
1026.6
1942
Male, age 51, unknown
1005.9
2223
Female, age 72, unknown
943.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1381.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1381.5
Samples: 183
Max nTPM: 4055.7
Min nTPM: 608.7
Std nTPM: 507.0
Median nTPM: 1248.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4055.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
3199.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2764.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2734.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
2674.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
2590.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2510.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2502.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
2378.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
2319.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
2238.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2194.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2139.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2100.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2095.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2062.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2033.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1983.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1960.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1952.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1941.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1930.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1922.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1921.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1879.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1872.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1869.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1866.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1861.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1858.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1790.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1785.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1776.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1760.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1754.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1747.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1745.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1743.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1738.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1714.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1713.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1696.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1696.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1664.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1656.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1642.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1635.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1632.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1632.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1626.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1619.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1600.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1598.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1597.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1588.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1587.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1568.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1564.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1551.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1547.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1540.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1525.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1518.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1503.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1500.9
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1481.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1443.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1395.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1392.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1388.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1383.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1380.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1366.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1361.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1357.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1355.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1349.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1349.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1339.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1320.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1319.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1314.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1308.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1306.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1291.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1291.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1271.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1271.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1258.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1256.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1252.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1248.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1247.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1243.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1238.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1235.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1225.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1218.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1213.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1210.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1210.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1202.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1200.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1195.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1191.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1180.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1171.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1167.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1157.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1154.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1151.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1144.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1143.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1135.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1134.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1122.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1121.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1118.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1116.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1105.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1104.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1101.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1100.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1095.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1094.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1093.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1091.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1085.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1084.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1082.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1080.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1080.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1074.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1064.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1063.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1062.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1050.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1041.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1038.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1035.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1029.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1027.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1023.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1021.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1017.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
996.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
991.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
984.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
980.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
975.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
966.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
946.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
938.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
937.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
932.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
926.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
924.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
920.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
896.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
888.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
866.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
841.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
833.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
833.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
831.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
830.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
821.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
819.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
817.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
814.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
810.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
805.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
804.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
787.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
786.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
766.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
762.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
748.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
739.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
729.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
709.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
614.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
608.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1603.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 931.2
Samples: 1
Max nTPM: 931.2
Min nTPM: 931.2
Sample A
931.2
Midbrain nTPM: 1473.7
Samples: 1
Max nTPM: 1473.7
Min nTPM: 1473.7
Sample A
1473.7
Superior colliculi nTPM: 1603.6
Samples: 1
Max nTPM: 1603.6
Min nTPM: 1603.6
Sample A
1603.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1581.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1581.5
Samples: 3
Max nTPM: 1836.8
Min nTPM: 1208.1
Sample A
Female
1699.6
Sample B
Female
1208.1
Sample C
Male
1836.8
Midbrain nTPM: 1562.8
Samples: 3
Max nTPM: 1774.3
Min nTPM: 1346.8
Sample B
Female
1346.8
Sample C
Male
1567.2
Sample D
Male
1774.3
Periaqueductal gray nTPM: 1553.2
Samples: 3
Max nTPM: 2075.4
Min nTPM: 1253.0
Sample B
Female
1331.3
Sample C
Male
2075.4
Sample D
Male
1253.0
Superior colliculi nTPM: 1522.3
Samples: 4
Max nTPM: 1812.9
Min nTPM: 1187.9
Sample A
Female
1646.6
Sample B
Female
1187.9
Sample C
Male
1812.9
Sample D
Male
1441.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1611.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1611.7
Samples: 4
Max nTPM: 1657.9
Min nTPM: 1573.7
Sample A
1581.7
Sample B
1573.7
Sample C
1633.4
Sample D
1657.9
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1461.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 1461.6
Samples: 4
Max nTPM: 1572.5
Min nTPM: 1339.0
Sample A
1416.5
Sample A
1572.5
Sample A
1518.3
Sample A
1339.0
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The Human Protein Atlas project is funded
