We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS10
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS10
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1347.7 nTPM
HPA Brain:394.2 nTPM
GTEx:1347.7 nTPM
FANTOM5:235.4 Scaled Tags Per Million
Pig:319.7 nTPM
Mouse:801.7 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

394.2
Sample id Sample description nTPM
Amygdala
nTPM: 379.8
2695 Female, age 67, right hemisphere 462.7
2514 Male, age 75, right hemisphere 406.6
2517 Female, age 94, left hemisphere 371.2
2814 Male, age 76, right hemisphere 329.6
1987 Female, age 91, left hemisphere 329.0
Basal amygdala
nTPM: 324.1
2827 Female, age 67, right hemisphere 445.8
2609 Male, age 75, right hemisphere 378.4
2110 Male, age 80, left hemisphere 314.2
2685 Female, age 94, left hemisphere 309.6
2243 Female, age 91, right hemisphere 259.9
1955 Male, age 76, both hemispheres 236.8
Central amygdala
nTPM: 371.2
2826 Female, age 94, left hemisphere 603.4
2515 Male, age 75, right hemisphere 436.1
1905 Male, age 76, both hemispheres 295.1
2239 Male, age 80, left hemisphere 285.6
2701 Female, age 91, right hemisphere 236.1
Corticomedial amygdala
nTPM: 303.0
2428 Male, age 75, right hemisphere 407.9
2535 Female, age 67, right hemisphere 328.0
2829 Male, age 80, left hemisphere 289.2
2429 Female, age 94, left hemisphere 272.7
2242 Female, age 91, right hemisphere 263.4
2240 Male, age 76, both hemispheres 256.7
Lateral amygdala
nTPM: 394.2
2830 Female, age 67, right hemisphere 567.3
2516 Male, age 75, right hemisphere 492.4
2534 Female, age 94, left hemisphere 465.5
2256 Male, age 80, left hemisphere 330.0
2255 Female, age 91, right hemisphere 259.4
1883 Male, age 76, both hemispheres 250.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1347.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1347.7
Samples: 181

Max nTPM: 4360.8
Min nTPM: 692.3
Std nTPM: 547.0
Median nTPM: 1235.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4360.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3731.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3145.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2994.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2950.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2874.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2804.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2694.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2633.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2535.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2211.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2156.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2145.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2080.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1985.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1909.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1902.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1885.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1880.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1854.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1854.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1853.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1817.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1810.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1807.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1793.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1793.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1759.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1746.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1732.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1726.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1695.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1669.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1661.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1637.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1626.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1623.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1622.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1620.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1568.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1563.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1548.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1516.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1515.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1514.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1512.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1496.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1486.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1477.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1475.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1457.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1455.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1451.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1436.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1436.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1435.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1431.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1399.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1397.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1389.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1385.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1381.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1379.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1372.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1364.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1363.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1358.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1352.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1345.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1345.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1343.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1335.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1322.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1314.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1310.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1305.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1299.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1289.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1280.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1278.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1275.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1274.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1269.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1256.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1254.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1251.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1239.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1237.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1236.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1236.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1235.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1230.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1229.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1221.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1215.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1212.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1210.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1208.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1198.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1185.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1185.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1184.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1180.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1177.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1171.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1163.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1161.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1148.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1134.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1130.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1120.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1116.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1098.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1092.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1089.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1088.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1087.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1084.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1074.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1074.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1072.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1070.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1070.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1054.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1047.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1047.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1041.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1039.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1039.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1033.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1031.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1030.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1027.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1026.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1019.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1016.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1005.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 991.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 991.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 989.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 984.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 983.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 981.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 978.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 978.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 973.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 963.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 940.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 932.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 931.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 928.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 916.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 898.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 891.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 885.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 884.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 881.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 877.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 874.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 843.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 833.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 832.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 831.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 821.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 820.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 818.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 806.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 805.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 793.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 789.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 787.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 779.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 766.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 753.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 743.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 730.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 719.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 716.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 699.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 698.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 692.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 235.4
FF:10151-102I7 76 years, female 235.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.7
Pig sample Sample description nTPM
Amygdala
nTPM: 319.7
Samples: 4

Max nTPM: 394.6
Min nTPM: 183.3
Sample A Female 394.6
Sample B Female 379.0
Sample C Male 321.7
Sample D Male 183.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

801.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 801.7
Samples: 4

Max nTPM: 870.2
Min nTPM: 758.1
Sample A Male 758.1
Sample B Male 800.1
Sample C Female 870.2
Sample D Female 778.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
70473987 Antisense, RP_050614_04_F10, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo