On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1181.9
nTPM
HPA Brain:
341.7
nTPM
GTEx:
1181.9
nTPM
FANTOM5:
283.9
Scaled Tags Per Million
Mouse:
426.2
nTPM
Rat:
49.5
nTPM
Pig:
535.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
341.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 320.5
2586
Male, age 75, left hemisphere
388.2
2666
Male, age 74, left hemisphere
380.8
2411
Female, age 72, unknown
348.7
2019
Male, age 18, unknown
341.1
1870
Female, age 42, unknown
318.2
1827
Male, age 72, unknown
305.0
2828
Female, age 72, unknown
303.4
2219
Male, age 76, both hemispheres
281.9
1833
Male, age 53, unknown
279.0
1830
Male, age 51, unknown
258.7
Dorsal raphe nucleus nTPM: 311.9
2298
Female, age 72, unknown
388.3
2750
Male, age 76, both hemispheres
313.5
2016
Female, age 72, unknown
307.5
1828
Male, age 53, unknown
288.3
2047
Male, age 72, unknown
262.0
Inferior colliculus nTPM: 307.7
2097
Female, age 72, unknown
347.3
1890
Male, age 53, unknown
340.7
2849
Male, age 72, unknown
275.6
1848
Female, age 42, unknown
267.3
Median raphe nucleus nTPM: 279.9
2220
Male, age 76, midline
279.9
Periaquaductal grey, anterior nTPM: 341.7
2502
Female, age 75, unknown
421.4
1795
Male, age 51, unknown
325.4
1947
Male, age 18, unknown
278.3
Periaquaductal grey, dorsal nTPM: 299.4
1840
Male, age 53, unknown
322.7
2464
Female, age 72, unknown
309.6
1831
Male, age 72, unknown
291.0
2850
Male, age 76, both hemispheres
274.2
Periaquaductal grey, lateral nTPM: 266.5
2053
Male, age 18, unknown
296.6
2140
Male, age 76, both hemispheres
278.4
2272
Male, age 74, both hemispheres
224.4
Pretectal area nTPM: 311.7
1816
Male, age 51, unknown
387.2
2007
Male, age 72, unknown
356.7
1817
Female, age 42, unknown
356.5
2316
Male, age 76, right hemisphere
336.3
2224
Female, age 72, unknown
335.1
1815
Male, age 53, unknown
322.7
1944
Female, age 72, unknown
291.5
2825
Male, age 18, unknown
287.0
2407
Male, age 75, both hemispheres
258.0
2667
Female, age 75, unknown
257.9
2273
Male, age 74, both hemispheres
240.2
Red nucleus nTPM: 325.5
2503
Female, age 72, unknown
421.7
2785
Male, age 18, unknown
338.5
1904
Male, age 53, unknown
335.7
2227
Male, age 72, unknown
333.8
1865
Male, age 51, unknown
333.7
1821
Female, age 72, unknown
332.4
2769
Male, age 72, unknown
329.7
2584
Male, age 75, left hemisphere
327.5
2725
Female, age 75, unknown
322.8
2588
Male, age 74, left hemisphere
306.7
1954
Female, age 42, unknown
269.5
2823
Male, age 76, right hemisphere
253.6
Substantia nigra nTPM: 336.0
1851
Male, age 51, unknown
406.9
2665
Male, age 74, both hemispheres
385.5
2241
Male, age 72, unknown
370.4
2409
Female, age 72, unknown
358.7
2699
Male, age 18, unknown
336.9
1916
Female, age 42, unknown
314.8
2590
Female, age 75, unknown
314.8
1889
Female, age 72, unknown
309.3
2583
Male, age 75, right hemisphere
282.5
1941
Male, age 53, unknown
279.8
Superior colliculus nTPM: 326.3
1913
Female, age 42, unknown
365.4
2587
Male, age 74, left hemisphere
359.0
1796
Male, age 53, unknown
340.6
2664
Male, age 75, both hemispheres
338.3
1995
Male, age 72, unknown
335.8
2261
Male, age 18, unknown
331.6
2668
Female, age 75, unknown
328.8
2087
Female, age 72, unknown
324.9
1839
Male, age 51, unknown
278.7
1895
Male, age 76, right hemisphere
259.7
Ventral tegmental area nTPM: 326.2
1915
Female, age 42, unknown
370.5
2021
Male, age 53, unknown
344.3
2410
Female, age 72, unknown
331.8
2223
Female, age 72, unknown
328.3
1942
Male, age 51, unknown
304.1
2218
Male, age 76, both hemispheres
278.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1181.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1181.9
Samples: 183
Max nTPM: 2875.0
Min nTPM: 467.7
Std nTPM: 440.1
Median nTPM: 1094.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2875.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
2729.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2702.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2532.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
2339.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2279.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2203.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2143.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2078.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2035.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1959.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1946.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1882.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1870.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1811.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1800.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1788.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1771.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1758.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1716.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1710.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1691.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1682.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1659.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1645.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1611.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1586.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1555.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1552.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1547.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1517.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1511.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1493.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1490.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1481.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1481.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1475.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1468.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1463.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1458.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1456.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1451.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1443.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1419.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1412.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1411.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1402.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1371.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1370.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1367.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1360.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1355.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1343.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1329.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1318.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1312.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1308.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1303.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1303.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1292.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1276.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1270.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1258.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1257.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1252.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1244.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1240.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1240.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1239.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1236.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1230.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1225.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1216.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1215.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1211.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1195.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1195.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1190.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1186.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1181.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1175.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1172.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1168.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1167.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1162.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1157.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1148.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1138.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1123.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1122.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1118.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1094.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1093.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1091.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1085.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1078.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1069.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1068.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1065.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1060.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1059.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1056.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1031.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1030.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1020.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1003.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1002.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1001.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
999.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
992.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
992.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
971.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
970.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
968.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
960.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
952.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
950.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
949.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
947.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
945.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
943.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
926.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
920.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
906.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
900.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
900.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
899.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
892.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
890.8
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
889.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
884.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
877.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
876.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
874.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
867.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
864.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
860.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
854.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
854.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
845.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
840.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
838.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
834.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
826.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
824.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
822.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
821.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
821.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
816.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
814.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
812.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
811.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
810.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
804.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
803.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
802.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
798.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
797.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
792.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
791.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
761.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
730.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
729.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
725.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
723.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
714.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
713.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
699.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
697.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
696.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
673.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
671.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
660.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
655.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
654.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
609.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
598.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
584.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
544.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
538.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
529.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
528.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
467.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
535.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 535.1
Samples: 3
Max nTPM: 684.6
Min nTPM: 412.0
Sample A
Female
684.6
Sample B
Female
508.7
Sample C
Male
412.0
Midbrain nTPM: 368.1
Samples: 3
Max nTPM: 476.0
Min nTPM: 299.5
Sample B
Female
476.0
Sample C
Male
328.9
Sample D
Male
299.5
Periaqueductal gray nTPM: 377.5
Samples: 3
Max nTPM: 410.8
Min nTPM: 354.1
Sample B
Female
367.6
Sample C
Male
410.8
Sample D
Male
354.1
Superior colliculi nTPM: 446.0
Samples: 4
Max nTPM: 565.4
Min nTPM: 372.2
Sample A
Female
565.4
Sample B
Female
469.5
Sample C
Male
377.0
Sample D
Male
372.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
426.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 426.2
Samples: 4
Max nTPM: 448.5
Min nTPM: 393.6
Sample A
448.5
Sample B
445.3
Sample C
393.6
Sample D
417.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.5
Rat sample
Sample description
nTPM
Midbrain nTPM: 49.5
Samples: 4
Max nTPM: 56.6
Min nTPM: 43.7
Sample A
56.6
Sample A
46.7
Sample A
51.1
Sample A
43.7
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The Human Protein Atlas project is funded
