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  • RPS10
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1033.4 nTPM
HPA Brain:477.9 nTPM
GTEx:1033.4 nTPM
FANTOM5:221.7 Scaled Tags Per Million
Pig:603.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

477.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 341.4
1981 Female, age 72, midline 452.1
2565 Male, age 75, midline 429.8
2048 Male, age 55, midline 289.8
2194 Female, age 79, both hemispheres 273.2
2816 Male, age 47, midline 262.1
Cervical spinal cord, dorsal horn
nTPM: 385.5
2173 Female, age 72, unknown 500.8
2069 Male, age 47, both hemispheres 486.0
1877 Male, age 55, unknown 391.9
2296 Male, age 66, both hemispheres 374.9
2297 Male, age 75, both hemispheres 294.1
2721 Male, age 90, both hemispheres 264.9
Cervical spinal cord, ventral horn
nTPM: 477.9
2480 Male, age 75, both hemispheres 678.2
2809 Male, age 90, both hemispheres 601.9
2098 Female, age 72, unknown 554.2
2295 Male, age 66, both hemispheres 431.4
2068 Male, age 55, unknown 403.8
2820 Female, age 79, both hemispheres 198.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1033.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1033.4
Samples: 204

Max nTPM: 2991.5
Min nTPM: 515.9
Std nTPM: 325.8
Median nTPM: 971.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2991.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1899.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1873.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1767.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1698.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1695.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1684.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1616.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1611.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1603.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1567.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1556.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1543.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1535.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1530.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1499.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1480.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1474.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1474.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1473.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1453.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1448.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1443.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1438.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1436.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1431.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1421.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1417.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1398.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1391.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1386.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1386.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1382.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1370.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1352.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1350.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1348.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1345.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1338.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1326.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1323.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1299.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1293.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1292.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1273.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1265.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1247.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1242.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1242.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1236.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1220.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1217.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1214.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1209.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1178.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1165.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1163.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1157.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1149.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1148.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1146.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1146.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1132.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1126.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1120.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1120.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1117.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1115.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1115.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1113.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1111.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1108.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1107.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1106.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1092.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1089.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1081.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1073.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1073.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1070.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1068.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1061.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1045.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1044.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 1040.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1038.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1038.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1035.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1031.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1030.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1030.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1026.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1013.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1006.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1004.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 997.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 992.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 990.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 985.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 981.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 979.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 972.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 970.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 966.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 964.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 959.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 957.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 953.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 944.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 940.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 940.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 933.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 932.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 931.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 930.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 929.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 921.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 915.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 915.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 913.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 910.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 910.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 907.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 901.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 900.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 894.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 891.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 891.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 889.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 885.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 881.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 878.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 875.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 872.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 871.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 868.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 865.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 860.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 855.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 854.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 851.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 840.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 832.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 832.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 830.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 830.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 830.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 823.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 816.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 815.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 812.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 812.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 801.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 796.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 785.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 784.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 782.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 775.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 774.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 774.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 773.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 772.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 757.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 749.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 749.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 744.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 735.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 734.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 727.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 719.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 719.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 712.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 708.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 703.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 702.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 701.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 698.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 696.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 689.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 684.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 681.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 680.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 678.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 670.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 670.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 665.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 660.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 658.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 657.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 654.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 653.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 649.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 642.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 641.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 624.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 616.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 611.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 575.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 570.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 565.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 561.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 548.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 527.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 515.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

221.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 221.7
FF:10159-103A6 76 years, female 232.5
FF:10181-103D1 60 years, female 211.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

603.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 603.1
Samples: 4

Max nTPM: 883.2
Min nTPM: 446.9
Sample A Female 449.7
Sample B Female 632.4
Sample C Male 883.2
Sample D Male 446.9
Ventral spinal cord
nTPM: 590.0
Samples: 4

Max nTPM: 651.9
Min nTPM: 514.8
Sample A Female 514.8
Sample B Female 632.2
Sample C Male 651.9
Sample D Male 560.9

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