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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:49.6 nTPM
HPA:49.6 nTPM
GTEx:37.8 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:51.5 nTPM
Allen mouse:8.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 49.6
Sample id Sample description nTPM
Amygdala
nTPM: 47.3
2814 Male, age 76, right hemisphere 60.5
2514 Male, age 75, right hemisphere 50.0
2695 Female, age 67, right hemisphere 49.8
2517 Female, age 94, left hemisphere 40.1
1987 Female, age 91, left hemisphere 36.0
Basal amygdala
nTPM: 41.9
2827 Female, age 67, right hemisphere 48.0
1955 Male, age 76, both hemispheres 45.2
2685 Female, age 94, left hemisphere 43.6
2110 Male, age 80, left hemisphere 41.2
2609 Male, age 75, right hemisphere 41.2
2243 Female, age 91, right hemisphere 31.8
Central amygdala
nTPM: 48.7
1905 Male, age 76, both hemispheres 61.8
2826 Female, age 94, left hemisphere 54.3
2515 Male, age 75, right hemisphere 43.9
2701 Female, age 91, right hemisphere 43.2
2239 Male, age 80, left hemisphere 40.1
Corticomedial amygdala
nTPM: 37.2
2428 Male, age 75, right hemisphere 45.0
2240 Male, age 76, both hemispheres 41.8
2429 Female, age 94, left hemisphere 38.5
2535 Female, age 67, right hemisphere 35.3
2829 Male, age 80, left hemisphere 33.6
2242 Female, age 91, right hemisphere 28.9
Lateral amygdala
nTPM: 49.6
2830 Female, age 67, right hemisphere 56.8
2516 Male, age 75, right hemisphere 54.8
1883 Male, age 76, both hemispheres 54.2
2534 Female, age 94, left hemisphere 49.1
2256 Male, age 80, left hemisphere 42.5
2255 Female, age 91, right hemisphere 40.0
Stria terminalis, bed nucleus
nTPM: 38.5
2201 Male, age 74, unknown 40.6
1974 Female, age 91, both hemispheres 38.9
2486 Female, age 94, both hemispheres 36.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.8
Samples: 152

Max nTPM: 131.9
Min nTPM: 4.0
Std nTPM: 15.7
Median nTPM: 34.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 131.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 82.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 75.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 70.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 64.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 63.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 62.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 62.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 62.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 62.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 61.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 61.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 60.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 57.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 57.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 55.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 54.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 54.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 53.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 52.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 52.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 50.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 49.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 49.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 49.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 48.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 47.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 46.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 46.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 45.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 44.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 44.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 44.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 44.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 42.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 42.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 41.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 41.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 41.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 40.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 40.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 40.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 40.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 40.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 38.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 38.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 37.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 37.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 37.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 37.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 37.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 37.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 36.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 36.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 36.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 35.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 35.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 35.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 35.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 35.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 35.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 35.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 34.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 34.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 34.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 34.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 34.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 33.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 32.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 32.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 32.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 32.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 31.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 31.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 31.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 31.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 31.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 31.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 30.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 30.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 30.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 30.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 30.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 30.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 30.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 30.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 30.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 29.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 29.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 29.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 29.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 28.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 28.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 28.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 28.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 28.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 28.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 27.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 27.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 27.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 27.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 27.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 27.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 27.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 26.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 26.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 26.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 26.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 26.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 26.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 25.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 25.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 25.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 24.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 24.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 24.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 24.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 23.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 23.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 23.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 23.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 23.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 22.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 22.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 21.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 21.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 21.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 20.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 20.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 20.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 20.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 20.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 19.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 19.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 17.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 17.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 17.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.5
FF:10151-102I7 76 years, female 49.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.0
Pig sample Sample description nTPM
Amygdala
nTPM: 37.9
Samples: 4

Max nTPM: 46.6
Min nTPM: 33.2
Sample A Female 46.6
Sample B Female 33.2
Sample C Male 35.3
Sample D Male 36.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 51.5
Samples: 4

Max nTPM: 60.4
Min nTPM: 45.5
Sample A Male 60.4
Sample B Male 45.5
Sample C Female 49.0
Sample D Female 51.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.9
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 8.9
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 6.7

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