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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:67.2 nTPM
HPA:67.2 nTPM
GTEx:38.6 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:53.7 nTPM
Mouse:76.1 nTPM
Allen mouse:5.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039978
Glial cells Medium
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 49.3
2302 Male, age 61, right hemisphere 59.3
2301 Female, age 72, unknown 59.1
2713 Male, age 75, left hemisphere 55.6
2306 Female, age 91, right hemisphere 52.5
2846 Female, age 79, unknown 50.3
1781 Male, age 74, unknown 45.2
1854 Male, age 80, left hemisphere 42.7
1857 Female, age 85, left hemisphere 41.4
2481 Female, age 94, left hemisphere 37.5
Claustrum
nTPM: 50.6
1956 Male, age 74, unknown 60.9
2392 Female, age 94, both hemispheres 60.6
2491 Male, age 75, both hemispheres 57.1
2198 Male, age 80, both hemispheres 50.2
2299 Female, age 85, both hemispheres 50.0
2196 Female, age 79, unknown 48.6
2568 Male, age 61, both hemispheres 47.5
2645 Female, age 72, unknown 43.2
2307 Female, age 91, both hemispheres 36.8
Globus pallidus, externus
nTPM: 67.2
2011 Female, age 91, left hemisphere 92.8
2395 Male, age 75, both hemispheres 69.7
2772 Female, age 79, unknown 69.0
1996 Male, age 80, right hemisphere 68.7
2567 Female, age 72, unknown 62.7
2646 Male, age 61, right hemisphere 60.8
2114 Female, age 85, right hemisphere 60.4
2644 Female, age 94, right hemisphere 53.4
Globus pallidus, internus
nTPM: 65.9
2778 Female, age 91, both hemispheres 83.5
2111 Female, age 85, right hemisphere 82.4
2714 Male, age 75, right hemisphere 73.4
1818 Male, age 74, unknown 64.3
2566 Female, age 72, unknown 62.7
2037 Male, age 80, right hemisphere 59.7
2483 Female, age 94, right hemisphere 57.7
1997 Male, age 61, left hemisphere 43.7
Nucleus accumbens
nTPM: 50.0
2305 Male, age 75, left hemisphere 64.1
2391 Female, age 94, left hemisphere 62.8
2698 Female, age 72, unknown 48.3
2732 Male, age 80, right hemisphere 48.2
1783 Male, age 74, unknown 46.9
2824 Male, age 61, right hemisphere 46.7
1806 Female, age 85, left hemisphere 44.9
1856 Female, age 91, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 51.8
2569 Male, age 61, both hemispheres 59.0
2842 Male, age 74, unknown 56.6
2200 Female, age 91, left hemisphere 53.8
2821 Male, age 75, both hemispheres 51.8
2300 Female, age 85, both hemispheres 49.8
2393 Male, age 80, right hemisphere 46.4
2484 Female, age 94, left hemisphere 45.2
Nucleus of the diagonal band
nTPM: 36.8
2029 Male, age 61, right hemisphere 40.3
1979 Male, age 74, unknown 37.9
1812 Female, age 91, both hemispheres 36.9
2775 Male, age 80, right hemisphere 35.5
2195 Female, age 85, both hemispheres 33.2
Olfactory tubercle
nTPM: 38.2
1998 Female, age 91, both hemispheres 40.2
2487 Female, age 94, left hemisphere 38.0
2856 Male, age 75, right hemisphere 37.8
1846 Male, age 80, right hemisphere 36.8
Putamen
nTPM: 52.1
2490 Male, age 61, left hemisphere 69.6
2647 Male, age 75, left hemisphere 61.0
1829 Male, age 74, unknown 52.9
2466 Female, age 79, unknown 52.5
2488 Female, age 85, left hemisphere 51.2
2482 Female, age 94, left hemisphere 49.0
1937 Female, age 91, right hemisphere 46.6
2489 Female, age 72, unknown 46.4
1838 Male, age 80, right hemisphere 39.8
Septal nuclei
nTPM: 38.7
2394 Male, age 61, left hemisphere 50.8
2199 Male, age 80, right hemisphere 41.4
2031 Female, age 72, unknown 38.2
2059 Female, age 85, both hemispheres 36.0
2629 Female, age 94, right hemisphere 35.9
1960 Male, age 74, unknown 34.9
2009 Female, age 91, both hemispheres 33.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 67.1
Min nTPM: 11.6
Std nTPM: 8.6
Median nTPM: 29.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 67.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 65.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 58.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 50.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 48.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 48.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 47.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 47.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 46.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.4
Samples: 246

Max nTPM: 123.9
Min nTPM: 6.6
Std nTPM: 12.8
Median nTPM: 25.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 123.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 99.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 87.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 69.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 65.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 61.6
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 59.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 57.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 55.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 53.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 51.9
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Brain - Putamen (basal ganglia)
Average nTPM: 38.6
Samples: 205

Max nTPM: 112.3
Min nTPM: 18.6
Std nTPM: 13.4
Median nTPM: 36.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 112.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 110.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 88.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 83.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 82.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 72.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 68.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 65.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 64.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 62.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 59.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8
Nucleus accumbens
Scaled Tags Per Million: 67.9
FF:10037-101F1 23-56 years, mixed 67.9
Putamen
Scaled Tags Per Million: 47.0
FF:10176-103C5 60 years, female 47.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.7
Pig sample Sample description nTPM
Caudate
nTPM: 51.9
Samples: 4

Max nTPM: 62.4
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 50.7
Sample C Male 62.4
Sample D Male 52.8
Putamen
nTPM: 53.7
Samples: 4

Max nTPM: 69.7
Min nTPM: 41.3
Sample A Female 41.3
Sample B Female 45.6
Sample C Male 69.7
Sample D Male 58.3
Septum
nTPM: 45.6
Samples: 4

Max nTPM: 57.9
Min nTPM: 40.0
Sample A Female 42.2
Sample B Female 42.4
Sample C Male 57.9
Sample D Male 40.0
Ventral pallidum
nTPM: 51.9
Samples: 4

Max nTPM: 65.0
Min nTPM: 43.7
Sample A Female 48.3
Sample B Female 43.7
Sample C Male 65.0
Sample D Male 50.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 76.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.2
Samples: 4

Max nTPM: 80.8
Min nTPM: 71.1
Sample A Male 79.9
Sample B Male 80.8
Sample C Female 71.1
Sample D Female 72.8
Septum
nTPM: 51.7
Samples: 4

Max nTPM: 60.7
Min nTPM: 45.1
Sample A Male 60.7
Sample B Male 45.1
Sample C Female 48.2
Sample D Female 52.6
Ventral forebrain
nTPM: 61.4
Samples: 4

Max nTPM: 65.0
Min nTPM: 57.0
Sample A Male 61.6
Sample B Male 65.0
Sample C Female 57.0
Sample D Female 61.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.9
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 5.9
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 5.5
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 5.5
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 4.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.