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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:44.4 nTPM
HPA:44.4 nTPM
GTEx:42.6 nTPM
FANTOM5:18.2 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:27.9 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018479
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.7
2306 Female, age 91, right hemisphere 47.1
2302 Male, age 61, right hemisphere 42.9
2301 Female, age 72, unknown 42.0
2481 Female, age 94, left hemisphere 41.9
2713 Male, age 75, left hemisphere 39.7
1854 Male, age 80, left hemisphere 39.6
2846 Female, age 79, unknown 38.4
1781 Male, age 74, unknown 37.8
1857 Female, age 85, left hemisphere 37.1
Claustrum
nTPM: 38.3
2299 Female, age 85, both hemispheres 44.0
2307 Female, age 91, both hemispheres 40.1
2196 Female, age 79, unknown 39.8
1956 Male, age 74, unknown 38.8
2392 Female, age 94, both hemispheres 38.1
2491 Male, age 75, both hemispheres 36.8
2198 Male, age 80, both hemispheres 36.7
2645 Female, age 72, unknown 35.9
2568 Male, age 61, both hemispheres 34.8
Globus pallidus, externus
nTPM: 44.4
1996 Male, age 80, right hemisphere 50.2
2011 Female, age 91, left hemisphere 48.2
2395 Male, age 75, both hemispheres 43.7
2772 Female, age 79, unknown 43.7
2646 Male, age 61, right hemisphere 43.4
2644 Female, age 94, right hemisphere 43.3
2567 Female, age 72, unknown 42.2
2114 Female, age 85, right hemisphere 40.9
Globus pallidus, internus
nTPM: 44.2
2111 Female, age 85, right hemisphere 48.2
2037 Male, age 80, right hemisphere 47.7
1818 Male, age 74, unknown 47.4
2778 Female, age 91, both hemispheres 46.3
2714 Male, age 75, right hemisphere 46.1
2566 Female, age 72, unknown 43.0
2483 Female, age 94, right hemisphere 42.3
1997 Male, age 61, left hemisphere 32.9
Nucleus accumbens
nTPM: 39.1
2391 Female, age 94, left hemisphere 44.2
2305 Male, age 75, left hemisphere 41.9
2698 Female, age 72, unknown 40.8
2732 Male, age 80, right hemisphere 40.1
1806 Female, age 85, left hemisphere 38.3
1856 Female, age 91, right hemisphere 37.2
1783 Male, age 74, unknown 36.1
2824 Male, age 61, right hemisphere 34.6
Nucleus basalis of Meynert
nTPM: 41.1
2842 Male, age 74, unknown 44.5
2569 Male, age 61, both hemispheres 43.8
2300 Female, age 85, both hemispheres 42.2
2821 Male, age 75, both hemispheres 41.5
2393 Male, age 80, right hemisphere 40.3
2200 Female, age 91, left hemisphere 37.8
2484 Female, age 94, left hemisphere 37.8
Nucleus of the diagonal band
nTPM: 35.8
1979 Male, age 74, unknown 37.8
1812 Female, age 91, both hemispheres 37.2
2775 Male, age 80, right hemisphere 36.8
2195 Female, age 85, both hemispheres 35.0
2029 Male, age 61, right hemisphere 32.4
Olfactory tubercle
nTPM: 34.9
1846 Male, age 80, right hemisphere 36.7
2856 Male, age 75, right hemisphere 35.3
2487 Female, age 94, left hemisphere 34.3
1998 Female, age 91, both hemispheres 33.4
Putamen
nTPM: 40.1
2490 Male, age 61, left hemisphere 46.8
2488 Female, age 85, left hemisphere 44.9
2482 Female, age 94, left hemisphere 44.3
1829 Male, age 74, unknown 39.1
2489 Female, age 72, unknown 38.1
2647 Male, age 75, left hemisphere 37.7
1937 Female, age 91, right hemisphere 37.0
1838 Male, age 80, right hemisphere 36.8
2466 Female, age 79, unknown 36.5
Septal nuclei
nTPM: 37.1
2199 Male, age 80, right hemisphere 43.1
2394 Male, age 61, left hemisphere 38.2
2059 Female, age 85, both hemispheres 38.0
2629 Female, age 94, right hemisphere 37.9
1960 Male, age 74, unknown 34.8
2009 Female, age 91, both hemispheres 33.9
2031 Female, age 72, unknown 33.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.4
Samples: 246

Max nTPM: 68.1
Min nTPM: 16.0
Std nTPM: 9.6
Median nTPM: 36.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 68.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 63.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 62.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 58.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 58.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 57.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 55.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 55.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 55.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.0
Samples: 246

Max nTPM: 86.9
Min nTPM: 17.3
Std nTPM: 12.2
Median nTPM: 31.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 86.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 82.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 71.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 68.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 66.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 66.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 64.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 63.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 62.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 62.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 61.0
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Brain - Putamen (basal ganglia)
Average nTPM: 42.6
Samples: 205

Max nTPM: 102.7
Min nTPM: 21.1
Std nTPM: 13.4
Median nTPM: 40.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 102.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 90.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 86.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 82.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 79.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 75.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 75.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 68.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 67.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 66.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 64.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.2
FF:10164-103B2 76 years, female 18.2
Nucleus accumbens
Scaled Tags Per Million: 16.0
FF:10037-101F1 23-56 years, mixed 16.0
Putamen
Scaled Tags Per Million: 17.7
FF:10176-103C5 60 years, female 17.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Caudate
nTPM: 13.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.3
Sample A Female 13.7
Sample B Female 14.2
Sample C Male 12.3
Sample D Male 12.3
Putamen
nTPM: 16.6
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.6
Sample A Female 20.9
Sample B Female 13.6
Sample C Male 16.5
Sample D Male 15.5
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.7
Sample A Female 16.2
Sample B Female 14.7
Sample C Male 15.9
Sample D Male 14.9
Ventral pallidum
nTPM: 14.9
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 15.5
Sample C Male 14.7
Sample D Male 15.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.9
Samples: 4

Max nTPM: 30.6
Min nTPM: 24.2
Sample A Male 27.3
Sample B Male 24.2
Sample C Female 29.3
Sample D Female 30.6
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 26.5
Min nTPM: 22.5
Sample A Male 22.5
Sample B Male 26.5
Sample C Female 23.3
Sample D Female 23.7
Ventral forebrain
nTPM: 25.8
Samples: 4

Max nTPM: 27.6
Min nTPM: 24.2
Sample A Male 24.2
Sample B Male 25.5
Sample C Female 27.6
Sample D Female 25.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
75694367 Antisense, RP_060518_03_F08, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.4
75694367 Antisense, RP_060518_03_F08, Mouse strain C57BL/6J (56 days, male) 1.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.