MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:58.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:24.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.5
1870 Female, age 42, unknown 44.3
1830 Male, age 51, unknown 42.2
1833 Male, age 53, unknown 42.2
2828 Female, age 72, unknown 42.1
2666 Male, age 74, left hemisphere 41.1
2019 Male, age 18, unknown 40.9
2411 Female, age 72, unknown 40.0
2586 Male, age 75, left hemisphere 38.0
1827 Male, age 72, unknown 37.8
2219 Male, age 76, both hemispheres 37.0
Dorsal raphe nucleus
nTPM: 39.2
2750 Male, age 76, both hemispheres 41.3
1828 Male, age 53, unknown 40.8
2016 Female, age 72, unknown 38.9
2047 Male, age 72, unknown 37.7
2298 Female, age 72, unknown 37.2
Inferior colliculus
nTPM: 38.9
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 39.3
2849 Male, age 72, unknown 39.1
2097 Female, age 72, unknown 37.0
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Pedunculopontine tegmental nucleus
nTPM: 42.7
2338 Male, age 61, both hemispheres 46.7
2334 Male, age 80, both hemispheres 42.9
1921 Female, age 85, both hemispheres 38.4
Periaquaductal grey, anterior
nTPM: 37.5
2502 Female, age 75, unknown 37.9
1947 Male, age 18, unknown 37.7
1795 Male, age 51, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 39.8
2850 Male, age 76, both hemispheres 43.3
1831 Male, age 72, unknown 40.4
2464 Female, age 72, unknown 38.7
1840 Male, age 53, unknown 36.7
Periaquaductal grey, lateral
nTPM: 40.4
2140 Male, age 76, both hemispheres 41.7
2272 Male, age 74, both hemispheres 40.0
2053 Male, age 18, unknown 39.3
Pretectal area
nTPM: 39.1
2667 Female, age 75, unknown 42.7
2316 Male, age 76, right hemisphere 41.4
2273 Male, age 74, both hemispheres 41.1
2825 Male, age 18, unknown 40.0
1817 Female, age 42, unknown 39.9
1815 Male, age 53, unknown 39.1
1944 Female, age 72, unknown 37.8
2407 Male, age 75, both hemispheres 37.5
2224 Female, age 72, unknown 37.3
2007 Male, age 72, unknown 37.2
1816 Male, age 51, unknown 36.4
Red nucleus
nTPM: 42.4
1865 Male, age 51, unknown 46.9
1904 Male, age 53, unknown 44.1
1954 Female, age 42, unknown 44.0
2769 Male, age 72, unknown 43.9
2823 Male, age 76, right hemisphere 43.5
2503 Female, age 72, unknown 43.0
2725 Female, age 75, unknown 42.6
1821 Female, age 72, unknown 42.5
2227 Male, age 72, unknown 42.4
2785 Male, age 18, unknown 40.6
2588 Male, age 74, left hemisphere 38.4
2584 Male, age 75, left hemisphere 36.2
Substantia nigra
nTPM: 40.9
2699 Male, age 18, unknown 45.3
2665 Male, age 74, both hemispheres 42.6
1851 Male, age 51, unknown 41.8
2409 Female, age 72, unknown 40.9
1916 Female, age 42, unknown 40.3
1889 Female, age 72, unknown 40.2
2241 Male, age 72, unknown 39.8
2583 Male, age 75, right hemisphere 39.6
1941 Male, age 53, unknown 39.2
2590 Female, age 75, unknown 39.1
Superior colliculus
nTPM: 39.7
1913 Female, age 42, unknown 46.5
1995 Male, age 72, unknown 44.5
2087 Female, age 72, unknown 40.5
1796 Male, age 53, unknown 38.9
1895 Male, age 76, right hemisphere 38.9
2587 Male, age 74, left hemisphere 38.2
1839 Male, age 51, unknown 38.0
2664 Male, age 75, both hemispheres 37.5
2668 Female, age 75, unknown 37.0
2261 Male, age 18, unknown 36.7
Ventral tegmental area
nTPM: 41.1
2218 Male, age 76, both hemispheres 43.5
1915 Female, age 42, unknown 41.8
2223 Female, age 72, unknown 41.6
2021 Male, age 53, unknown 40.0
2410 Female, age 72, unknown 40.0
1942 Male, age 51, unknown 39.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.7
Samples: 139

Max nTPM: 115.2
Min nTPM: 32.2
Std nTPM: 14.7
Median nTPM: 55.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 103.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 103.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 102.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 99.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 89.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 88.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 14.8
Sample A Female 37.1
Sample B Female 19.8
Sample C Male 17.1
Sample D Male 14.8
Periaqueductal gray
nTPM: 18.1
Samples: 3

Max nTPM: 19.3
Min nTPM: 17.4
Sample B Female 19.3
Sample C Male 17.4
Sample D Male 17.7
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 28.7
Min nTPM: 17.4
Sample A Female 28.7
Sample B Female 20.8
Sample C Male 17.4
Sample D Male 21.1
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.1
Sample A Female 27.2
Sample B Female 27.1
Sample C Male 18.1
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 27.4
Min nTPM: 21.7
Sample A Male 25.1
Sample B Male 21.7
Sample C Female 23.1
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75694367 Antisense, RP_060518_03_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.