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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:58.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:24.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.5
1870 Female, age 42, unknown 44.3
1830 Male, age 51, unknown 42.2
1833 Male, age 53, unknown 42.2
2828 Female, age 72, unknown 42.1
2666 Male, age 74, left hemisphere 41.1
2019 Male, age 18, unknown 40.9
2411 Female, age 72, unknown 40.0
2586 Male, age 75, left hemisphere 38.0
1827 Male, age 72, unknown 37.8
2219 Male, age 76, both hemispheres 37.0
Dorsal raphe nucleus
nTPM: 39.2
2750 Male, age 76, both hemispheres 41.3
1828 Male, age 53, unknown 40.8
2016 Female, age 72, unknown 38.9
2047 Male, age 72, unknown 37.7
2298 Female, age 72, unknown 37.2
Inferior colliculus
nTPM: 38.9
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 39.3
2849 Male, age 72, unknown 39.1
2097 Female, age 72, unknown 37.0
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Pedunculopontine tegmental nucleus
nTPM: 42.7
2338 Male, age 61, both hemispheres 46.7
2334 Male, age 80, both hemispheres 42.9
1921 Female, age 85, both hemispheres 38.4
Periaquaductal grey, anterior
nTPM: 37.5
2502 Female, age 75, unknown 37.9
1947 Male, age 18, unknown 37.7
1795 Male, age 51, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 39.8
2850 Male, age 76, both hemispheres 43.3
1831 Male, age 72, unknown 40.4
2464 Female, age 72, unknown 38.7
1840 Male, age 53, unknown 36.7
Periaquaductal grey, lateral
nTPM: 40.4
2140 Male, age 76, both hemispheres 41.7
2272 Male, age 74, both hemispheres 40.0
2053 Male, age 18, unknown 39.3
Pretectal area
nTPM: 39.1
2667 Female, age 75, unknown 42.7
2316 Male, age 76, right hemisphere 41.4
2273 Male, age 74, both hemispheres 41.1
2825 Male, age 18, unknown 40.0
1817 Female, age 42, unknown 39.9
1815 Male, age 53, unknown 39.1
1944 Female, age 72, unknown 37.8
2407 Male, age 75, both hemispheres 37.5
2224 Female, age 72, unknown 37.3
2007 Male, age 72, unknown 37.2
1816 Male, age 51, unknown 36.4
Red nucleus
nTPM: 42.4
1865 Male, age 51, unknown 46.9
1904 Male, age 53, unknown 44.1
1954 Female, age 42, unknown 44.0
2769 Male, age 72, unknown 43.9
2823 Male, age 76, right hemisphere 43.5
2503 Female, age 72, unknown 43.0
2725 Female, age 75, unknown 42.6
1821 Female, age 72, unknown 42.5
2227 Male, age 72, unknown 42.4
2785 Male, age 18, unknown 40.6
2588 Male, age 74, left hemisphere 38.4
2584 Male, age 75, left hemisphere 36.2
Substantia nigra
nTPM: 40.9
2699 Male, age 18, unknown 45.3
2665 Male, age 74, both hemispheres 42.6
1851 Male, age 51, unknown 41.8
2409 Female, age 72, unknown 40.9
1916 Female, age 42, unknown 40.3
1889 Female, age 72, unknown 40.2
2241 Male, age 72, unknown 39.8
2583 Male, age 75, right hemisphere 39.6
1941 Male, age 53, unknown 39.2
2590 Female, age 75, unknown 39.1
Superior colliculus
nTPM: 39.7
1913 Female, age 42, unknown 46.5
1995 Male, age 72, unknown 44.5
2087 Female, age 72, unknown 40.5
1796 Male, age 53, unknown 38.9
1895 Male, age 76, right hemisphere 38.9
2587 Male, age 74, left hemisphere 38.2
1839 Male, age 51, unknown 38.0
2664 Male, age 75, both hemispheres 37.5
2668 Female, age 75, unknown 37.0
2261 Male, age 18, unknown 36.7
Ventral tegmental area
nTPM: 41.1
2218 Male, age 76, both hemispheres 43.5
1915 Female, age 42, unknown 41.8
2223 Female, age 72, unknown 41.6
2021 Male, age 53, unknown 40.0
2410 Female, age 72, unknown 40.0
1942 Male, age 51, unknown 39.8

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.7
Samples: 139

Max nTPM: 115.2
Min nTPM: 32.2
Std nTPM: 14.7
Median nTPM: 55.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 103.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 103.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 102.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 99.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 89.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 88.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 79.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 79.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 78.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 77.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 77.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 76.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 76.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 74.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 72.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 72.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 71.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 69.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 69.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 68.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 67.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 67.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 67.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 66.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 66.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 66.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 65.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 65.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 64.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 64.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 63.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 63.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 63.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 62.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 62.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 61.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 61.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 61.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 61.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 61.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 60.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 60.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 60.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 60.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 60.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 60.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 59.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 59.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 58.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 57.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 57.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 57.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 57.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 57.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 56.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 56.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 56.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 56.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 56.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 55.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 55.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 55.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 55.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 54.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 52.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 52.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 52.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 52.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 52.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 52.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 51.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 51.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 51.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 51.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 51.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 51.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 51.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 51.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 50.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 50.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 50.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 50.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 50.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 50.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 49.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 49.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 49.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 49.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 49.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 49.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 49.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 49.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 48.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 48.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 48.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 47.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 47.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 47.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 47.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 46.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 46.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 46.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 46.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 46.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 45.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 45.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 45.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 45.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 44.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 44.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 44.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 43.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 43.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 43.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 43.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 42.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 42.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 42.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 38.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.1
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 14.8
Sample A Female 37.1
Sample B Female 19.8
Sample C Male 17.1
Sample D Male 14.8
Periaqueductal gray
nTPM: 18.1
Samples: 3

Max nTPM: 19.3
Min nTPM: 17.4
Sample B Female 19.3
Sample C Male 17.4
Sample D Male 17.7
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 28.7
Min nTPM: 17.4
Sample A Female 28.7
Sample B Female 20.8
Sample C Male 17.4
Sample D Male 21.1
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.1
Sample A Female 27.2
Sample B Female 27.1
Sample C Male 18.1
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 27.4
Min nTPM: 21.7
Sample A Male 25.1
Sample B Male 21.7
Sample C Female 23.1
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75694367 Antisense, RP_060518_03_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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