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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:47.3 nTPM
GTEx:47.3 nTPM
FANTOM5:8.2 Scaled Tags Per Million
Pig:35.5 nTPM
Mouse:52.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 47.3
Samples: 105

Max nTPM: 64.4
Min nTPM: 34.5
Std nTPM: 4.9
Median nTPM: 0.0
490_1 67 years, female 64.4
414_1 84 years, female 61.8
413_1 59 years, female 55.7
518_1 75 years, female 55.7
137_1 83 years, male 55.3
501_1 88 years, male 54.7
415_1 77 years, female 54.6
495_1 57 years, female 54.4
347_1 72 years, male 54.3
2_1 77 years, female 54.1
406_1 79 years, male 53.0
177_1 74 years, male 52.9
324_1 76 years, male 52.6
375_1 74 years, female 52.6
316_1 62 years, male 52.4
466_1 57 years, female 52.4
229_1 69 years, female 52.2
308_1 70 years, female 52.2
405_1 91 years, male 51.9
468_1 89 years, male 51.9
286_1 68 years, female 51.8
237_1 82 years, male 51.7
307_1 66 years, female 51.5
425_1 59 years, female 51.5
491_1 89 years, female 50.9
162_1 79 years, female 50.8
389_1 86 years, female 50.7
172_1 72 years, female 50.4
447_1 81 years, male 50.4
142_1 61 years, female 50.2
217_1 76 years, male 50.2
173_1 67 years, male 50.0
32_1 67 years, male 49.9
189_1 76 years, male 49.9
246_1 77 years, male 49.9
145_1 84 years, male 49.4
126_1 63 years, male 49.3
526_1 61 years, male 49.3
251_1 78 years, male 49.0
396_1 62 years, male 49.0
35_1 74 years, female 48.9
321_1 62 years, female 48.9
266_1 85 years, male 48.4
117_1 61 years, male 48.3
480_1 63 years, male 48.3
349_1 83 years, male 48.2
314_1 67 years, male 48.1
81_1 67 years, male 47.8
43_1 64 years, female 47.1
292_1 71 years, male 47.1
139_1 64 years, female 47.0
149_1 88 years, male 47.0
311_1 78 years, male 47.0
348_1 84 years, male 47.0
317_1 60 years, male 46.6
404_1 82 years, female 46.5
254_1 77 years, female 46.4
499_1 55 years, female 46.3
503_1 68 years, male 46.1
313_1 79 years, female 46.0
319_1 81 years, male 45.9
42_1 85 years, male 45.7
163_1 78 years, male 45.6
89_1 63 years, male 45.4
243_1 75 years, male 45.3
109_1 81 years, female 45.2
6_1 73 years, female 45.0
295_1 61 years, female 45.0
335_1 73 years, female 44.9
18_1 88 years, male 44.8
379_1 60 years, male 44.7
41_1 94 years, female 44.6
17_1 71 years, male 44.5
315_1 62 years, female 44.5
265_1 87 years, male 44.4
322_1 76 years, male 44.4
4_1 88 years, female 44.0
376_1 75 years, female 44.0
291_1 76 years, male 43.9
384_1 83 years, male 43.9
517_1 88 years, male 43.9
293_1 68 years, female 43.8
318_1 68 years, male 43.7
350_1 84 years, female 43.7
115_1 83 years, male 43.4
120_1 70 years, female 43.1
264_1 73 years, female 43.1
288_1 66 years, female 42.9
394_1 75 years, female 42.6
9_1 66 years, female 42.3
119_1 70 years, female 41.9
99_1 64 years, male 41.6
320_1 89 years, female 41.6
352_1 62 years, male 41.4
386_1 76 years, male 41.3
153_1 70 years, female 41.1
377_1 82 years, female 40.9
355_1 70 years, female 40.8
354_1 81 years, female 39.6
506_1 65 years, male 39.6
353_1 82 years, female 39.1
218_1 71 years, female 38.8
452_1 88 years, female 38.2
351_1 91 years, male 38.1
356_1 87 years, female 34.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 8.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 8.2
FF:10030-101E3 24-65 years, mixed 8.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.5
Pig sample Sample description nTPM
Retina
nTPM: 35.5
Samples: 4

Max nTPM: 36.1
Min nTPM: 35.2
Sample A Female 35.3
Sample B Female 35.3
Sample C Male 36.1
Sample D Male 35.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.6
Mouse sample Sample description nTPM
Retina
nTPM: 52.6
Samples: 4

Max nTPM: 63.8
Min nTPM: 43.4
Sample A Male 52.8
Sample B Male 50.4
Sample C Female 43.4
Sample D Female 63.8

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by the Knut & Alice Wallenberg Foundation.