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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:10.7 nTPM
FANTOM5:41.1 Scaled Tags Per Million
Pig:31.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 8.9
2565 Male, age 75, midline 9.2
2194 Female, age 79, both hemispheres 9.0
2048 Male, age 55, midline 8.8
1981 Female, age 72, midline 8.7
2816 Male, age 47, midline 8.7
Cervical spinal cord, dorsal horn
nTPM: 9.7
2297 Male, age 75, both hemispheres 10.7
2069 Male, age 47, both hemispheres 10.4
2173 Female, age 72, unknown 9.9
2296 Male, age 66, both hemispheres 9.8
1877 Male, age 55, unknown 9.0
2721 Male, age 90, both hemispheres 8.4
Cervical spinal cord, ventral horn
nTPM: 9.6
2809 Male, age 90, both hemispheres 10.9
2480 Male, age 75, both hemispheres 10.2
2098 Female, age 72, unknown 10.0
2295 Male, age 66, both hemispheres 9.8
2068 Male, age 55, unknown 9.0
2820 Female, age 79, both hemispheres 8.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 10.7
Samples: 159

Max nTPM: 16.9
Min nTPM: 6.7
Std nTPM: 1.7
Median nTPM: 10.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 16.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 14.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 14.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 14.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 14.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 14.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 14.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 14.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 14.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 14.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 14.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 14.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 14.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 14.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 13.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 13.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 13.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 13.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 13.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 13.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 13.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 12.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 12.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 12.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 12.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 12.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 12.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 12.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 12.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 12.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 12.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 12.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 12.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 11.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 11.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 11.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 11.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 11.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 11.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 11.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 11.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 11.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 11.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 11.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 11.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 11.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 11.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 11.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 11.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 11.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 11.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 11.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 11.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 11.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 11.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 11.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 11.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 11.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 10.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 10.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 10.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 10.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 10.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 10.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 10.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 10.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 10.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 10.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 10.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 10.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 10.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 10.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 10.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 10.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 10.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 10.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 10.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 10.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 10.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 10.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 10.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 10.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 10.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 10.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 10.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 10.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 10.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 10.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 10.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 10.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 10.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 10.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 10.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 9.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 9.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 9.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 9.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 9.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 9.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 9.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 9.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 9.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 9.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 9.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 9.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 9.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 9.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 9.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 9.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 9.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 9.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 9.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 9.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 9.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 9.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 9.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 9.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 9.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 9.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 9.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 9.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 9.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 9.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 9.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 9.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 9.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 9.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 9.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 8.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 8.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 8.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 8.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 8.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 8.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 8.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 8.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 8.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 8.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 8.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 8.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 8.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 8.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 8.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 8.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 8.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 8.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 7.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 7.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 7.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 7.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 6.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.1
FF:10159-103A6 76 years, female 48.2
FF:10181-103D1 60 years, female 33.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 27.8
Samples: 4

Max nTPM: 28.9
Min nTPM: 26.3
Sample A Female 28.9
Sample B Female 26.3
Sample C Male 28.7
Sample D Male 27.2
Ventral spinal cord
nTPM: 31.4
Samples: 4

Max nTPM: 34.6
Min nTPM: 27.7
Sample A Female 34.6
Sample B Female 30.0
Sample C Male 27.7
Sample D Male 33.2

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