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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1927.9 nTPM
HPA Brain:1781.1 nTPM
GTEx:1927.9 nTPM
FANTOM5:1933.5 Scaled Tags Per Million
Pig:1411.8 nTPM
Mouse:813.0 nTPM
Allen mouse:30.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1781.1
Sample id Sample description nTPM
Amygdala
nTPM: 1781.1
2814 Male, age 76, right hemisphere 2093.2
1987 Female, age 91, left hemisphere 1873.4
2695 Female, age 67, right hemisphere 1767.9
2514 Male, age 75, right hemisphere 1725.8
2517 Female, age 94, left hemisphere 1445.1
Basal amygdala
nTPM: 1513.9
2110 Male, age 80, left hemisphere 1862.8
1955 Male, age 76, both hemispheres 1642.3
2243 Female, age 91, right hemisphere 1600.0
2685 Female, age 94, left hemisphere 1516.1
2609 Male, age 75, right hemisphere 1364.9
2827 Female, age 67, right hemisphere 1097.5
Central amygdala
nTPM: 1623.7
2239 Male, age 80, left hemisphere 1760.1
1905 Male, age 76, both hemispheres 1715.6
2826 Female, age 94, left hemisphere 1675.7
2515 Male, age 75, right hemisphere 1613.8
2701 Female, age 91, right hemisphere 1353.4
Corticomedial amygdala
nTPM: 1553.6
2829 Male, age 80, left hemisphere 1786.3
2242 Female, age 91, right hemisphere 1776.1
2240 Male, age 76, both hemispheres 1612.0
2429 Female, age 94, left hemisphere 1502.0
2428 Male, age 75, right hemisphere 1486.2
2535 Female, age 67, right hemisphere 1159.2
Lateral amygdala
nTPM: 1561.0
2534 Female, age 94, left hemisphere 2067.6
1883 Male, age 76, both hemispheres 1698.6
2256 Male, age 80, left hemisphere 1634.4
2516 Male, age 75, right hemisphere 1451.4
2255 Female, age 91, right hemisphere 1300.9
2830 Female, age 67, right hemisphere 1213.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1927.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1927.9
Samples: 181

Max nTPM: 3916.2
Min nTPM: 1078.7
Std nTPM: 437.3
Median nTPM: 1888.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3916.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 3527.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3210.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2996.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2967.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2885.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2816.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2805.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2788.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2767.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2731.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2676.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2641.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2630.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2592.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2557.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2555.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2464.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2450.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2446.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 2445.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2386.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2368.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2361.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2357.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2306.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2277.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2271.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2262.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2250.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2240.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2228.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 2224.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2218.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2216.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2208.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2189.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2184.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2165.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2161.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2159.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2154.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2153.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2152.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2150.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2142.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2137.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2132.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 2125.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 2121.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2113.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2113.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2112.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 2100.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2098.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 2090.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2084.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2077.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2072.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2068.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2042.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2038.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 2031.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2030.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 2030.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2022.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2022.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2004.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2000.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1990.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1985.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1977.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1977.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1977.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1957.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1951.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1946.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1944.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1941.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1938.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1932.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1927.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1919.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1919.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1916.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1915.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1913.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1905.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1897.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1889.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1888.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1870.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1863.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1849.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1848.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1840.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1839.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1827.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1824.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1822.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1822.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1815.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1810.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1796.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1785.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1782.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1775.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1773.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1767.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1761.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1759.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1757.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1757.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1755.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1748.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1745.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1737.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1737.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1733.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1727.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1725.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1715.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1714.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1698.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1691.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1688.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1687.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1687.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1663.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1660.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1657.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1653.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1648.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1647.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1643.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1637.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1633.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1618.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1613.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1610.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1596.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1596.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1595.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1594.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1589.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1580.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1578.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1556.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1552.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1549.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1537.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1535.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1530.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1516.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1511.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1510.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1507.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1466.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1459.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1457.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1448.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1445.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1442.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1441.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1433.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1427.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1425.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1386.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1376.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1364.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1349.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1330.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1330.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1302.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1302.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1300.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1264.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1249.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1130.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1103.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1078.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1933.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1933.5
FF:10151-102I7 76 years, female 1933.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1411.8
Pig sample Sample description nTPM
Amygdala
nTPM: 1411.8
Samples: 4

Max nTPM: 1943.4
Min nTPM: 1219.0
Sample A Female 1943.4
Sample B Female 1245.6
Sample C Male 1239.1
Sample D Male 1219.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

813.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 813.1
Samples: 4

Max nTPM: 861.1
Min nTPM: 772.5
Sample A Male 861.1
Sample B Male 791.3
Sample C Female 827.3
Sample D Female 772.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

30.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 30.9
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 34.1
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 30.6
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 27.8

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