HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:2283.4 nTPM
HPA Brain:2211.9 nTPM
GTEx:2283.4 nTPM
FANTOM5:2100.2 Scaled Tags Per Million
Pig:2327.8 nTPM
Mouse:1083.7 nTPM
Allen mouse:25.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041264Antibody HPA041271Antibody CAB002621
Glial cells Not detectedNot detectedMedium
Neuronal cells MediumNot detectedMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 2211.9
Sample id Sample description nTPM
Hippocampus
nTPM: 1917.3
1898 Male, age 80, left hemisphere 2296.4
2621 Female, age 67, right hemisphere 2114.3
1855 Male, age 76, left hemisphere 2077.1
1911 Female, age 85, right hemisphere 1857.0
2529 Female, age 94, left hemisphere 1603.9
2148 Female, age 91, left hemisphere 1555.1
Dentate gyrus
nTPM: 1948.4
2530 Female, age 94, left hemisphere 2677.2
2010 Male, age 76, both hemispheres 2317.2
1927 Female, age 91, both hemispheres 1990.5
2246 Female, age 85, both hemispheres 1790.4
2528 Male, age 74, both hemispheres 1551.1
2531 Female, age 67, both hemispheres 1364.1
Entorhinal gyrus
nTPM: 1686.5
1938 Female, age 85, left hemisphere 1896.2
2764 Male, age 80, right hemisphere 1881.0
1787 Male, age 76, left hemisphere 1748.1
2117 Female, age 91, right hemisphere 1746.5
2613 Female, age 94, left hemisphere 1705.9
2686 Male, age 75, right hemisphere 1141.2
Hippocampus, CA1
nTPM: 2211.9
2749 Male, age 80, left hemisphere 4028.6
1873 Female, age 85, both hemispheres 1983.0
2045 Male, age 76, both hemispheres 1774.0
2527 Male, age 74, both hemispheres 1742.7
2082 Female, age 91, right hemisphere 1530.9
Hippocampus, CA2
nTPM: 1980.0
1963 Male, age 80, left hemisphere 2631.3
1892 Male, age 76, both hemispheres 2091.0
2249 Male, age 74, both hemispheres 1914.7
2437 Female, age 94, left hemisphere 1859.0
1940 Female, age 85, left hemisphere 1755.2
2113 Female, age 91, right hemisphere 1628.8
Hippocampus, CA3
nTPM: 1916.5
2137 Male, age 80, left hemisphere 3314.5
1867 Male, age 76, both hemispheres 2110.4
2436 Male, age 74, both hemispheres 1699.0
2620 Female, age 94, left hemisphere 1543.5
1891 Female, age 85, both hemispheres 1523.6
2861 Female, age 67, both hemispheres 1308.1
Parahippocampal cortex
nTPM: 1703.6
2250 Female, age 67, right hemisphere 2156.0
2245 Female, age 91, both hemispheres 2115.1
2532 Female, age 72, left hemisphere 1898.1
2018 Male, age 76, both hemispheres 1818.9
1933 Female, age 85, both hemispheres 1781.2
1850 Male, age 80, both hemispheres 1751.8
1990 Female, age 91, right hemisphere 1696.4
2693 Female, age 94, both hemispheres 1432.3
2692 Male, age 74, both hemispheres 1267.7
2622 Female, age 67, right hemisphere 1118.5
Perirhinal gyrus
nTPM: 1919.9
2521 Female, age 94, right hemisphere 2051.4
1794 Male, age 80, right hemisphere 2031.3
1847 Female, age 91, left hemisphere 1967.7
1841 Female, age 85, right hemisphere 1958.5
2848 Male, age 76, right hemisphere 1590.4
Subiculum
nTPM: 1829.8
2042 Male, age 76, both hemispheres 2203.9
1901 Male, age 80, both hemispheres 2192.9
1977 Female, age 85, both hemispheres 1891.4
2438 Female, age 94, left hemisphere 1682.1
2729 Female, age 91, right hemisphere 1573.6
2619 Male, age 74, both hemispheres 1434.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 2283.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2283.4
Samples: 255

Max nTPM: 7054.1
Min nTPM: 869.9
Std nTPM: 777.3
Median nTPM: 2147.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 7054.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 5160.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 4512.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4431.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 4311.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 4131.9
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 4000.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 3921.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 3917.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3914.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 3850.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2100.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 2100.2
FF:10169-103B7 60 years, female 2551.7
FF:10153-102I9 76 years, female 1648.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 2327.8
Pig sample Sample description nTPM
Subiculum
nTPM: 1569.2
Samples: 4

Max nTPM: 2050.8
Min nTPM: 1289.4
Sample A Female 2050.8
Sample B Female 1442.3
Sample C Male 1494.1
Sample D Male 1289.4
Dorsal hippocampus
nTPM: 2327.8
Samples: 4

Max nTPM: 3277.6
Min nTPM: 1736.7
Sample A Female 3277.6
Sample B Female 2127.2
Sample C Male 2169.5
Sample D Male 1736.7
Entorhinal cortex
nTPM: 1519.0
Samples: 4

Max nTPM: 1791.1
Min nTPM: 1273.7
Sample A Female 1791.1
Sample B Female 1500.5
Sample C Male 1510.6
Sample D Male 1273.7
Ventral hippocampus
nTPM: 2007.3
Samples: 4

Max nTPM: 2409.2
Min nTPM: 1295.4
Sample A Female 1968.3
Sample B Female 1295.4
Sample C Male 2356.2
Sample D Male 2409.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1083.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 769.8
Samples: 4

Max nTPM: 801.2
Min nTPM: 723.1
Sample A Male 787.0
Sample B Male 723.1
Sample C Female 767.9
Sample D Female 801.2
Hippocampal formation
nTPM: 1083.7
Samples: 4

Max nTPM: 1188.8
Min nTPM: 1040.1
Sample A Male 1040.1
Sample B Male 1057.7
Sample C Female 1188.8
Sample D Female 1048.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 25.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.7
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 28.3
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 27.7
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 21.1

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