On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2608.5
nTPM
HPA Brain:
3699.8
nTPM
GTEx:
2608.5
nTPM
FANTOM5:
3346.0
Scaled Tags Per Million
Macaque:
1759.4
nTPM
Mouse:
1034.6
nTPM
Pig:
3292.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
1696581
Sample
Intensity
Spinal cord_01
2563327
Spinal cord_02
1732688
Spinal cord_03
1711174
Spinal cord_04
1472612
Spinal cord_05
1211789
Spinal cord_06
1681987
Spinal cord_07
1572752
Spinal cord_08
1725574
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3699.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 3008.5
2193
Male, age 75, both hemispheres
4165.8
2819
Male, age 47, both hemispheres
2750.6
2818
Female, age 79, both hemispheres
2717.3
2734
Male, age 80, both hemispheres
2400.5
Cervical spinal cord, central gray nTPM: 2154.3
1981
Female, age 72, midline
2736.4
2565
Male, age 75, midline
2185.7
2816
Male, age 47, midline
2077.2
2194
Female, age 79, both hemispheres
1988.3
2048
Male, age 55, midline
1784.0
Cervical spinal cord, dorsal horn nTPM: 2423.8
2173
Female, age 72, unknown
3083.8
2296
Male, age 66, both hemispheres
2798.6
2069
Male, age 47, both hemispheres
2677.9
2721
Male, age 90, both hemispheres
2053.1
2297
Male, age 75, both hemispheres
1968.4
1877
Male, age 55, unknown
1961.0
Cervical spinal cord, ventral horn nTPM: 2488.0
2098
Female, age 72, unknown
3458.6
2295
Male, age 66, both hemispheres
2550.6
2480
Male, age 75, both hemispheres
2538.8
2809
Male, age 90, both hemispheres
2538.6
2068
Male, age 55, unknown
2071.5
2820
Female, age 79, both hemispheres
1770.1
Dorsal funiculus (white matter) nTPM: 3276.0
2128
Male, age 75, both hemispheres
4097.2
2810
Male, age 90, both hemispheres
3605.6
2817
Male, age 47, both hemispheres
3150.0
2064
Female, age 79, both hemispheres
3123.8
2812
Male, age 66, both hemispheres
2403.4
Lateral funiculus (white matter) nTPM: 3699.8
2294
Male, age 66, both hemispheres
4020.5
2192
Male, age 75, both hemispheres
3932.6
2099
Male, age 90, both hemispheres
3670.4
2094
Female, age 79, both hemispheres
3175.7
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2608.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 2608.5
Samples: 204
Max nTPM: 5201.5
Min nTPM: 1052.5
Std nTPM: 714.8
Median nTPM: 2458.1
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
5201.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
4921.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
4687.5
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
4489.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
4429.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
4360.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
4338.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
4229.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
4185.4
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
4083.7
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
3879.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
3832.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
3807.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
3674.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
3659.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
3607.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
3576.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
3569.4
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
3553.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
3524.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
3522.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
3519.9
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
3497.2
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
3496.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
3460.3
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
3432.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
3431.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
3430.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
3414.8
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
3392.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
3375.1
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
3367.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
3360.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
3359.9
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
3338.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
3331.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
3289.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
3238.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
3229.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
3191.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
3183.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
3169.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
3144.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
3130.9
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
3106.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
3104.2
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
3084.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
3075.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
3066.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
3009.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
2990.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
2986.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
2986.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
2979.9
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
2961.5
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
2949.7
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
2928.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
2925.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
2906.1
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
2900.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
2868.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
2841.9
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
2839.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
2830.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
2808.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
2804.2
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
2803.5
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
2803.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
2800.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
2797.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
2776.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
2773.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
2761.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
2734.3
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
2730.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
2710.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
2680.0
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
2673.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
2662.0
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
2661.6
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
2643.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
2626.6
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
2625.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
2619.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
2615.8
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
2598.5
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
2597.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
2596.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
2595.3
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
2594.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
2593.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
2587.1
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
2576.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
2554.2
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
2527.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
2518.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
2496.8
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
2483.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
2483.2
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
2462.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
2460.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
2460.3
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
2455.9
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
2426.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
2424.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
2418.4
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
2415.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
2404.2
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
2400.2
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
2395.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
2391.8
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
2390.8
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
2385.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
2382.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
2378.5
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
2369.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
2368.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
2362.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
2356.8
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
2356.7
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
2356.0
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
2349.4
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
2344.8
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
2342.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
2330.5
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
2325.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
2316.7
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
2301.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
2296.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
2290.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
2290.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
2288.0
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
2276.9
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
2275.8
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
2255.0
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
2244.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
2243.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
2234.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
2234.2
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
2230.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
2220.8
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
2218.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
2214.1
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
2212.1
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
2205.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
2204.6
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
2204.2
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
2186.7
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
2174.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
2172.3
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
2170.0
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
2169.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
2162.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
2148.2
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
2141.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
2131.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
2130.8
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
2119.4
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
2112.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
2088.8
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
2065.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
2042.8
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
2015.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
2012.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1991.6
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1987.9
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1984.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1983.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
1982.9
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1977.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1946.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1941.3
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1921.1
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1917.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1916.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
1913.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1906.7
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1902.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1900.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
1897.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1896.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1887.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1869.3
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
1865.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1852.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1846.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
1825.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1808.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1769.1
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
1744.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
1715.8
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
1708.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
1695.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1658.5
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
1646.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1580.1
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1555.3
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
1463.0
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1403.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
1401.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
1385.7
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
1252.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1180.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1052.5
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1759.4
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 1516.6
Samples: 2
Max nTPM: 1565.1
Min nTPM: 1468.0
Sample A
1468.0
Sample B
1565.1
Ventral spinal cord nTPM: 1759.4
Samples: 1
Max nTPM: 1759.4
Min nTPM: 1759.4
Sample A
1759.4
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3292.0
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 2965.5
Samples: 4
Max nTPM: 3669.1
Min nTPM: 2423.1
Sample A
Female
2423.1
Sample B
Female
2920.6
Sample C
Male
3669.1
Sample D
Male
2849.0
Ventral spinal cord nTPM: 3292.0
Samples: 4
Max nTPM: 3439.7
Min nTPM: 3123.2
Sample A
Female
3123.2
Sample B
Female
3288.2
Sample C
Male
3316.8
Sample D
Male
3439.7
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1034.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 1034.6
Samples: 4
Max nTPM: 1086.0
Min nTPM: 1002.0
Sample A
1039.3
Sample B
1086.0
Sample C
1002.0
Sample D
1010.9
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The Human Protein Atlas project is funded
