On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1910.1
nTPM
HPA Brain:
2001.4
nTPM
GTEx:
1910.1
nTPM
FANTOM5:
2232.8
Scaled Tags Per Million
Macaque:
1164.5
nTPM
Mouse:
1512.9
nTPM
Pig:
2535.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2001.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1748.2
2019
Male, age 18, unknown
1993.0
1870
Female, age 42, unknown
1969.8
1830
Male, age 51, unknown
1887.1
2411
Female, age 72, unknown
1879.9
1833
Male, age 53, unknown
1832.4
2828
Female, age 72, unknown
1776.9
2666
Male, age 74, left hemisphere
1763.3
1827
Male, age 72, unknown
1579.3
2586
Male, age 75, left hemisphere
1529.2
2219
Male, age 76, both hemispheres
1271.6
Dorsal raphe nucleus nTPM: 1665.5
2750
Male, age 76, both hemispheres
1973.7
2298
Female, age 72, unknown
1726.8
1828
Male, age 53, unknown
1635.2
2016
Female, age 72, unknown
1506.3
2047
Male, age 72, unknown
1485.6
Inferior colliculus nTPM: 1523.6
1848
Female, age 42, unknown
1588.6
2097
Female, age 72, unknown
1539.8
1890
Male, age 53, unknown
1495.9
2849
Male, age 72, unknown
1470.3
Median raphe nucleus nTPM: 1807.2
2220
Male, age 76, midline
1807.2
Periaquaductal grey, anterior nTPM: 1572.1
1947
Male, age 18, unknown
1644.5
1795
Male, age 51, unknown
1626.9
2502
Female, age 75, unknown
1445.0
Periaquaductal grey, dorsal nTPM: 1439.6
2850
Male, age 76, both hemispheres
1629.2
1831
Male, age 72, unknown
1508.3
2464
Female, age 72, unknown
1378.8
1840
Male, age 53, unknown
1242.1
Periaquaductal grey, lateral nTPM: 1608.1
2272
Male, age 74, both hemispheres
1854.4
2140
Male, age 76, both hemispheres
1509.6
2053
Male, age 18, unknown
1460.3
Pretectal area nTPM: 1718.1
1817
Female, age 42, unknown
2044.2
2007
Male, age 72, unknown
1859.5
1815
Male, age 53, unknown
1836.8
2273
Male, age 74, both hemispheres
1805.0
1944
Female, age 72, unknown
1789.5
1816
Male, age 51, unknown
1673.6
2667
Female, age 75, unknown
1648.4
2407
Male, age 75, both hemispheres
1627.8
2224
Female, age 72, unknown
1601.7
2316
Male, age 76, right hemisphere
1529.6
2825
Male, age 18, unknown
1483.5
Red nucleus nTPM: 2001.4
1865
Male, age 51, unknown
2221.7
1904
Male, age 53, unknown
2166.9
2769
Male, age 72, unknown
2153.2
2227
Male, age 72, unknown
2135.6
2785
Male, age 18, unknown
2132.5
1821
Female, age 72, unknown
2088.2
2725
Female, age 75, unknown
2078.6
1954
Female, age 42, unknown
2052.7
2503
Female, age 72, unknown
1975.8
2823
Male, age 76, right hemisphere
1910.8
2584
Male, age 75, left hemisphere
1706.0
2588
Male, age 74, left hemisphere
1394.9
Substantia nigra nTPM: 1766.0
2583
Male, age 75, right hemisphere
2139.3
2590
Female, age 75, unknown
2071.5
1916
Female, age 42, unknown
1823.9
1851
Male, age 51, unknown
1780.2
1941
Male, age 53, unknown
1772.3
1889
Female, age 72, unknown
1756.0
2665
Male, age 74, both hemispheres
1696.9
2699
Male, age 18, unknown
1625.4
2409
Female, age 72, unknown
1576.1
2241
Male, age 72, unknown
1417.9
Superior colliculus nTPM: 1685.8
1913
Female, age 42, unknown
2071.7
1995
Male, age 72, unknown
1960.2
2587
Male, age 74, left hemisphere
1956.0
1796
Male, age 53, unknown
1758.7
2261
Male, age 18, unknown
1756.5
2087
Female, age 72, unknown
1660.3
1839
Male, age 51, unknown
1572.3
2668
Female, age 75, unknown
1520.2
1895
Male, age 76, right hemisphere
1309.4
2664
Male, age 75, both hemispheres
1292.2
Ventral tegmental area nTPM: 1844.1
2223
Female, age 72, unknown
2370.8
2218
Male, age 76, both hemispheres
1913.9
2410
Female, age 72, unknown
1893.2
1915
Female, age 42, unknown
1696.4
2021
Male, age 53, unknown
1645.4
1942
Male, age 51, unknown
1545.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1910.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1910.1
Samples: 183
Max nTPM: 4566.6
Min nTPM: 919.7
Std nTPM: 723.0
Median nTPM: 1703.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4566.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
4474.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4258.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
4028.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
3913.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
3801.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3790.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
3784.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3474.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3400.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3320.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3315.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3198.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
3180.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
3120.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
3119.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3059.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2994.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2982.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2895.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
2865.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2820.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
2809.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2653.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
2641.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2609.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
2543.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2533.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2525.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2508.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2457.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2456.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2431.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
2421.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
2374.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2362.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2360.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2356.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2352.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2280.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2265.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
2253.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2252.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2200.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
2192.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2181.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2147.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2130.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2128.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2116.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2106.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2105.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2090.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2087.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
2066.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2054.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2050.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
2045.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
2036.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2031.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2028.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2028.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2010.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2002.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1996.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1992.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1978.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1975.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1931.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1929.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1919.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1919.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1915.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1913.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1909.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1904.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1872.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1869.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1850.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1845.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1842.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1830.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1822.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1796.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1766.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1760.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1759.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1758.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1744.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1728.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1709.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1703.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1701.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1690.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1687.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1684.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1679.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1669.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1650.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1639.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1638.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1637.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1636.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1636.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1615.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1615.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1604.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1603.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1595.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1593.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1591.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1580.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1575.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1568.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1565.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1551.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1540.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1527.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1522.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1517.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1513.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1504.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1497.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1485.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1464.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1459.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1459.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1452.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1444.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1440.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1434.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1429.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1423.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1407.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1392.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1387.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1376.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1376.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1369.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1366.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1360.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1345.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1340.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1339.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1335.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1334.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1312.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1309.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1309.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1308.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1304.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1298.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1297.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1297.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1292.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1287.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1286.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1277.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1272.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1271.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1266.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1260.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1221.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1214.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1206.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1203.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1194.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1171.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1170.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1168.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1150.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1143.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1134.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1131.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1117.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1113.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1101.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1056.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1048.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1042.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
981.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
939.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
919.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1164.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 1164.5
Samples: 1
Max nTPM: 1164.5
Min nTPM: 1164.5
Sample A
1164.5
Midbrain nTPM: 960.4
Samples: 1
Max nTPM: 960.4
Min nTPM: 960.4
Sample A
960.4
Superior colliculi nTPM: 1127.2
Samples: 1
Max nTPM: 1127.2
Min nTPM: 1127.2
Sample A
1127.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2535.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 2535.1
Samples: 3
Max nTPM: 2817.7
Min nTPM: 2237.2
Sample A
Female
2817.7
Sample B
Female
2237.2
Sample C
Male
2550.5
Midbrain nTPM: 2035.2
Samples: 3
Max nTPM: 2324.0
Min nTPM: 1728.9
Sample B
Female
2324.0
Sample C
Male
2052.6
Sample D
Male
1728.9
Periaqueductal gray nTPM: 1990.2
Samples: 3
Max nTPM: 2269.1
Min nTPM: 1703.8
Sample B
Female
1997.6
Sample C
Male
2269.1
Sample D
Male
1703.8
Superior colliculi nTPM: 2392.1
Samples: 4
Max nTPM: 2779.8
Min nTPM: 2087.2
Sample A
Female
2779.8
Sample B
Female
2087.2
Sample C
Male
2357.7
Sample D
Male
2343.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1512.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1513.0
Samples: 4
Max nTPM: 1576.7
Min nTPM: 1449.3
Sample A
1556.5
Sample B
1449.3
Sample C
1576.7
Sample D
1469.3
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The Human Protein Atlas project is funded
