We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CHMP5
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CHMP5
TISSUE PRIMARY DATA WHITE MATTER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:56.9 nTPM
HPA:56.9 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:177.4 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 56.9
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 50.2
1920 Male, age 76, both hemispheres 50.2
Anterior funiculus (white matter)
nTPM: 52.1
2193 Male, age 75, both hemispheres 54.9
2819 Male, age 47, both hemispheres 51.7
2818 Female, age 79, both hemispheres 51.3
2734 Male, age 80, both hemispheres 50.5
Area striata (white matter)
nTPM: 48.7
2258 Female, age 91, left hemisphere 48.7
Cerebellar white matter
nTPM: 54.3
2105 Male, age 74, right hemisphere 58.3
1931 Female, age 91, left hemisphere 56.5
1864 Male, age 80, left hemisphere 54.3
2174 Male, age 61, right hemisphere 54.2
1837 Male, age 76, left hemisphere 53.6
2773 Female, age 85, right hemisphere 48.9
Corpus callosum, genu (white matter)
nTPM: 56.9
1885 Female, age 94, left hemisphere 61.1
1934 Male, age 61, right hemisphere 59.1
1886 Female, age 67, right hemisphere 58.6
1849 Female, age 91, right hemisphere 54.7
2771 Male, age 75, left hemisphere 54.4
1887 Male, age 76, left hemisphere 53.6
Corpus callosum, splenium (white matter)
nTPM: 55.0
2847 Female, age 67, right hemisphere 61.6
2238 Female, age 94, right hemisphere 56.3
2104 Male, age 75, left hemisphere 52.1
1946 Male, age 76, left hemisphere 50.2
Dorsal funiculus (white matter)
nTPM: 53.0
2810 Male, age 90, both hemispheres 54.6
2128 Male, age 75, both hemispheres 54.5
2812 Male, age 66, both hemispheres 53.7
2817 Male, age 47, both hemispheres 52.3
2064 Female, age 79, both hemispheres 50.0
Lateral funiculus (white matter)
nTPM: 53.6
2099 Male, age 90, both hemispheres 58.1
2094 Female, age 79, both hemispheres 53.6
2192 Male, age 75, both hemispheres 52.5
2294 Male, age 66, both hemispheres 50.1
Occipital cortex (white matter)
nTPM: 52.5
2259 Male, age 75, midline 55.5
2257 Female, age 67, both hemispheres 49.5
Parahippocampal cortex (white matter)
nTPM: 49.8
2157 Female, age 91, both hemispheres 49.8
Parieto-temporal junction (white matter)
nTPM: 54.0
1935 Female, age 94, right hemisphere 63.1
1999 Female, age 67, right hemisphere 57.8
2774 Male, age 61, right hemisphere 51.9
2770 Female, age 91, right hemisphere 51.1
2469 Male, age 75, right hemisphere 50.6
2121 Male, age 76, left hemisphere 49.4
Somatomor cortex, precentral gyrus (white matter)
nTPM: 46.2
2439 Male, age 75, right hemisphere 46.2
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 47.5
2623 Male, age 75, right hemisphere 47.5
Temporal white matter
nTPM: 50.1
2736 Female, age 91, right hemisphere 57.4
2523 Female, age 94, left hemisphere 51.8
2254 Male, age 75, right hemisphere 50.2
1801 Male, age 76, left hemisphere 48.2
2524 Female, age 85, left hemisphere 42.8

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 95.3
FF:10042-101F6 24-68 years, mixed 95.3

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.1
Pig sample Sample description nTPM
Corpus callosum
nTPM: 64.1
Samples: 4

Max nTPM: 75.0
Min nTPM: 57.1
Sample A Female 59.7
Sample B Female 75.0
Sample C Male 64.5
Sample D Male 57.1

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 177.4
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 177.4
Samples: 3

Max nTPM: 194.1
Min nTPM: 159.8
Sample A Male 178.4
Sample B Male 159.8
Sample D Female 194.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.