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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:73.6 nTPM
HPA Brain:231.0 nTPM
GTEx:73.6 nTPM
FANTOM5:214.0 Scaled Tags Per Million
Pig:115.6 nTPM
Mouse:358.6 nTPM
Allen mouse:18.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.0
Sample id Sample description nTPM
Amygdala
nTPM: 231.0
2814 Male, age 76, right hemisphere 362.3
2695 Female, age 67, right hemisphere 213.9
2514 Male, age 75, right hemisphere 209.3
1987 Female, age 91, left hemisphere 196.8
2517 Female, age 94, left hemisphere 172.9
Basal amygdala
nTPM: 165.2
1955 Male, age 76, both hemispheres 232.1
2609 Male, age 75, right hemisphere 177.1
2110 Male, age 80, left hemisphere 158.5
2243 Female, age 91, right hemisphere 150.2
2827 Female, age 67, right hemisphere 141.5
2685 Female, age 94, left hemisphere 131.9
Central amygdala
nTPM: 185.7
1905 Male, age 76, both hemispheres 273.8
2515 Male, age 75, right hemisphere 191.8
2826 Female, age 94, left hemisphere 169.3
2239 Male, age 80, left hemisphere 157.4
2701 Female, age 91, right hemisphere 136.3
Corticomedial amygdala
nTPM: 168.8
2428 Male, age 75, right hemisphere 217.8
2240 Male, age 76, both hemispheres 205.1
2829 Male, age 80, left hemisphere 162.4
2429 Female, age 94, left hemisphere 158.8
2242 Female, age 91, right hemisphere 151.4
2535 Female, age 67, right hemisphere 117.6
Lateral amygdala
nTPM: 176.8
1883 Male, age 76, both hemispheres 256.7
2516 Male, age 75, right hemisphere 207.6
2830 Female, age 67, right hemisphere 164.2
2534 Female, age 94, left hemisphere 153.2
2256 Male, age 80, left hemisphere 146.7
2255 Female, age 91, right hemisphere 132.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 73.6
Samples: 152

Max nTPM: 114.9
Min nTPM: 53.6
Std nTPM: 12.2
Median nTPM: 71.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 114.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 107.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 102.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 100.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 98.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 96.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 96.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 95.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 95.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 93.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 91.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 91.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 90.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 86.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 85.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 85.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 85.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 84.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 84.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 83.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 83.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 83.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 83.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 82.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 81.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 81.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 81.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 81.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 80.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 80.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 79.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 79.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 79.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 79.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 79.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 78.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 78.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 77.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 77.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 76.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 76.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 76.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 76.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 75.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 75.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 75.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 74.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 74.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 74.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 74.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 73.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 73.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 73.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 73.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 72.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 72.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 72.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 72.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 71.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 71.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 70.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 69.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 69.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 69.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 69.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 68.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 68.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 68.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 68.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 68.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 68.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 67.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 67.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 67.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 66.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 66.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 66.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 66.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 66.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 66.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 65.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 65.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 65.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 65.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 65.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 65.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 65.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 65.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 64.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 64.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 64.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 64.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 63.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 63.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 63.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 62.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 62.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 62.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 61.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 61.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 60.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 60.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 60.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 59.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 59.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 59.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 58.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 57.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 57.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 57.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 56.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 56.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 56.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 55.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 55.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 54.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 53.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 53.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 214.0
FF:10151-102I7 76 years, female 214.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.6
Pig sample Sample description nTPM
Amygdala
nTPM: 115.6
Samples: 4

Max nTPM: 140.2
Min nTPM: 96.1
Sample A Female 140.2
Sample B Female 116.0
Sample C Male 96.1
Sample D Male 110.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 358.6
Samples: 4

Max nTPM: 369.5
Min nTPM: 334.9
Sample A Male 365.7
Sample B Male 364.3
Sample C Female 334.9
Sample D Female 369.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.6
79591729 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 23.9
79904258 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 16.6
197 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 13.3
196 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 11.6

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