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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:106.7 nTPM
HPA:106.7 nTPM
GTEx:75.7 nTPM
FANTOM5:215.3 Scaled Tags Per Million
Pig:105.2 nTPM
Mouse:358.4 nTPM
Allen mouse:18.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 106.7
Sample id Sample description nTPM
Amygdala
nTPM: 106.7
2814 Male, age 76, right hemisphere 168.4
2514 Male, age 75, right hemisphere 97.4
2695 Female, age 67, right hemisphere 97.0
1987 Female, age 91, left hemisphere 90.6
2517 Female, age 94, left hemisphere 80.1
Basal amygdala
nTPM: 76.8
1955 Male, age 76, both hemispheres 109.0
2609 Male, age 75, right hemisphere 82.1
2110 Male, age 80, left hemisphere 72.9
2243 Female, age 91, right hemisphere 70.2
2827 Female, age 67, right hemisphere 65.0
2685 Female, age 94, left hemisphere 61.7
Central amygdala
nTPM: 85.7
1905 Male, age 76, both hemispheres 127.9
2515 Male, age 75, right hemisphere 86.8
2826 Female, age 94, left hemisphere 77.6
2239 Male, age 80, left hemisphere 73.0
2701 Female, age 91, right hemisphere 63.1
Corticomedial amygdala
nTPM: 79.1
2428 Male, age 75, right hemisphere 101.2
2240 Male, age 76, both hemispheres 96.7
2829 Male, age 80, left hemisphere 76.0
2429 Female, age 94, left hemisphere 75.2
2242 Female, age 91, right hemisphere 70.9
2535 Female, age 67, right hemisphere 54.7
Lateral amygdala
nTPM: 82.3
1883 Male, age 76, both hemispheres 120.8
2516 Male, age 75, right hemisphere 97.6
2830 Female, age 67, right hemisphere 72.9
2534 Female, age 94, left hemisphere 71.9
2256 Male, age 80, left hemisphere 68.5
2255 Female, age 91, right hemisphere 62.2
Stria terminalis, bed nucleus
nTPM: 77.1
2201 Male, age 74, unknown 78.5
1974 Female, age 91, both hemispheres 78.4
2486 Female, age 94, both hemispheres 74.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 75.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.7
Samples: 152

Max nTPM: 118.2
Min nTPM: 55.2
Std nTPM: 12.5
Median nTPM: 74.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 118.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 115.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 110.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 104.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 102.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 101.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 99.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 99.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 98.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 97.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 95.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 94.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 94.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 93.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 91.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 89.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 89.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 88.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 88.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 87.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 87.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 86.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 86.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 86.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 85.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 85.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 84.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 84.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 83.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 83.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 83.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 82.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 81.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 81.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 81.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 81.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 81.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 80.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 79.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 79.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 78.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 78.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 77.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 77.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 77.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 77.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 77.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 76.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 76.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 75.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 75.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 75.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 75.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 74.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 74.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 74.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 74.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 73.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 73.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 73.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 71.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 71.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 71.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 71.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 71.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 70.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 70.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 70.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 70.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 70.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 69.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 69.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 69.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 69.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 68.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 68.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 68.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 67.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 67.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 67.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 67.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 67.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 67.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 67.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 67.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 67.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 67.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 66.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 66.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 66.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 65.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 65.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 65.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 65.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 64.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 64.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 63.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 63.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 63.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 63.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 63.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 63.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 62.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 62.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 62.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 61.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 61.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 61.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 61.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 59.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 59.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 58.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 58.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 58.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 57.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 57.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 56.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 56.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 55.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 55.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 215.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 215.3
FF:10151-102I7 76 years, female 215.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.2
Pig sample Sample description nTPM
Amygdala
nTPM: 105.2
Samples: 4

Max nTPM: 131.4
Min nTPM: 85.5
Sample A Female 131.4
Sample B Female 105.7
Sample C Male 85.5
Sample D Male 98.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 358.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 358.4
Samples: 4

Max nTPM: 369.2
Min nTPM: 334.8
Sample A Male 365.5
Sample B Male 364.0
Sample C Female 334.8
Sample D Female 369.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.6
79591729 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 23.9
79904258 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 16.6
197 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 13.3
196 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 11.6

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