MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:112.9 nTPM
HPA:112.9 nTPM
GTEx:72.2 nTPM
FANTOM5:222.1 Scaled Tags Per Million
Pig:178.0 nTPM
Mouse:262.7 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.3
1827 Male, age 72, unknown 117.5
2828 Female, age 72, unknown 98.0
2019 Male, age 18, unknown 91.1
1870 Female, age 42, unknown 85.7
2411 Female, age 72, unknown 84.5
2666 Male, age 74, left hemisphere 82.8
2586 Male, age 75, left hemisphere 77.7
2219 Male, age 76, both hemispheres 77.6
1833 Male, age 53, unknown 70.7
1830 Male, age 51, unknown 67.3
Dorsal raphe nucleus
nTPM: 75.4
2298 Female, age 72, unknown 95.8
2750 Male, age 76, both hemispheres 78.4
2016 Female, age 72, unknown 73.5
1828 Male, age 53, unknown 66.2
2047 Male, age 72, unknown 63.0
Inferior colliculus
nTPM: 82.7
1848 Female, age 42, unknown 90.6
2097 Female, age 72, unknown 86.8
1890 Male, age 53, unknown 81.8
2849 Male, age 72, unknown 71.5
Median raphe nucleus
nTPM: 75.2
2220 Male, age 76, midline 75.2
Pedunculopontine tegmental nucleus
nTPM: 82.9
1921 Female, age 85, both hemispheres 86.9
2334 Male, age 80, both hemispheres 82.2
2338 Male, age 61, both hemispheres 79.6
Periaquaductal grey, anterior
nTPM: 112.9
1795 Male, age 51, unknown 124.3
1947 Male, age 18, unknown 116.8
2502 Female, age 75, unknown 97.4
Periaquaductal grey, dorsal
nTPM: 95.9
1831 Male, age 72, unknown 109.5
2850 Male, age 76, both hemispheres 102.0
1840 Male, age 53, unknown 96.4
2464 Female, age 72, unknown 75.6
Periaquaductal grey, lateral
nTPM: 101.3
2272 Male, age 74, both hemispheres 120.4
2053 Male, age 18, unknown 102.3
2140 Male, age 76, both hemispheres 81.1
Pretectal area
nTPM: 110.9
1816 Male, age 51, unknown 160.8
1944 Female, age 72, unknown 154.3
2007 Male, age 72, unknown 133.9
1815 Male, age 53, unknown 131.7
1817 Female, age 42, unknown 116.8
2273 Male, age 74, both hemispheres 109.9
2224 Female, age 72, unknown 92.9
2667 Female, age 75, unknown 83.3
2825 Male, age 18, unknown 82.1
2316 Male, age 76, right hemisphere 79.1
2407 Male, age 75, both hemispheres 74.9
Red nucleus
nTPM: 73.4
2785 Male, age 18, unknown 89.2
2503 Female, age 72, unknown 88.1
2725 Female, age 75, unknown 83.9
1904 Male, age 53, unknown 76.4
1954 Female, age 42, unknown 74.1
1821 Female, age 72, unknown 73.7
1865 Male, age 51, unknown 71.9
2584 Male, age 75, left hemisphere 69.1
2823 Male, age 76, right hemisphere 66.7
2227 Male, age 72, unknown 63.1
2588 Male, age 74, left hemisphere 63.1
2769 Male, age 72, unknown 61.7
Substantia nigra
nTPM: 74.2
1889 Female, age 72, unknown 110.8
2590 Female, age 75, unknown 89.4
2665 Male, age 74, both hemispheres 84.4
1851 Male, age 51, unknown 73.4
2409 Female, age 72, unknown 72.9
2583 Male, age 75, right hemisphere 71.3
1916 Female, age 42, unknown 69.8
1941 Male, age 53, unknown 60.6
2241 Male, age 72, unknown 58.9
2699 Male, age 18, unknown 50.4
Superior colliculus
nTPM: 106.5
2261 Male, age 18, unknown 138.8
2087 Female, age 72, unknown 124.8
1796 Male, age 53, unknown 121.9
1995 Male, age 72, unknown 117.9
2668 Female, age 75, unknown 110.0
1913 Female, age 42, unknown 108.0
2587 Male, age 74, left hemisphere 92.4
1895 Male, age 76, right hemisphere 87.0
1839 Male, age 51, unknown 85.3
2664 Male, age 75, both hemispheres 79.2
Ventral tegmental area
nTPM: 78.3
2410 Female, age 72, unknown 97.2
2021 Male, age 53, unknown 82.5
2218 Male, age 76, both hemispheres 75.4
1915 Female, age 42, unknown 73.8
1942 Male, age 51, unknown 71.7
2223 Female, age 72, unknown 69.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.2
Samples: 139

Max nTPM: 124.6
Min nTPM: 41.4
Std nTPM: 14.2
Median nTPM: 68.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 124.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 122.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 108.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 105.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 104.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 101.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 99.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 98.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 98.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 95.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 94.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 222.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 222.1
FF:10158-103A5 76 years, female 222.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 178.0
Pig sample Sample description nTPM
Midbrain
nTPM: 178.1
Samples: 4

Max nTPM: 231.0
Min nTPM: 117.1
Sample A Female 231.0
Sample B Female 133.6
Sample C Male 230.5
Sample D Male 117.1
Periaqueductal gray
nTPM: 126.7
Samples: 3

Max nTPM: 134.5
Min nTPM: 116.2
Sample B Female 134.5
Sample C Male 129.5
Sample D Male 116.2
Substantia nigra
nTPM: 134.1
Samples: 4

Max nTPM: 159.9
Min nTPM: 120.6
Sample A Female 159.9
Sample B Female 132.3
Sample C Male 123.4
Sample D Male 120.6
Superior colliculi
nTPM: 173.5
Samples: 4

Max nTPM: 204.3
Min nTPM: 152.8
Sample A Female 155.9
Sample B Female 180.8
Sample C Male 204.3
Sample D Male 152.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 262.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 262.7
Samples: 4

Max nTPM: 270.7
Min nTPM: 257.3
Sample A Male 257.3
Sample B Male 258.9
Sample C Female 270.7
Sample D Female 263.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
79591729 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 13.9
79904258 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 8.9
197 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 7.6
196 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 4.9
195 Sense, RPS_Baylor_36960, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.